Atauschii AET4Gv20436400
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET4Gv20436400 [ AET4Gv20436400] |
4D | 294233474 | 294239750 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET4Gv20436400.1 AET4Gv20436400.1 |
Low | No | 3942 | OG0000176 | Get ORF Coding potential... Type: noncoding Potential: -1.149 Folding energies... MFEI: -26.786 AMFE: -0.660 GC content %: 40.614 | |
| Atauschii_AET4Gv20436400.11 AET4Gv20436400.11 |
Low | No | 5194 | OG0000176 | Get ORF Coding potential... Type: noncoding Potential: -0.898 Folding energies... MFEI: -26.268 AMFE: -0.659 GC content %: 39.873 | |
| Atauschii_AET4Gv20436400.12 AET4Gv20436400.12 |
Low | No | 3733 | OG0000176 | Get ORF Coding potential... Type: noncoding Potential: -1.148 Folding energies... MFEI: -27.144 AMFE: -0.666 GC content %: 40.745 | |
| Atauschii_AET4Gv20436400.13 AET4Gv20436400.13 |
Low | No | 3712 | OG0000176 | Get ORF Coding potential... Type: noncoding Potential: -1.147 Folding energies... MFEI: -27.026 AMFE: -0.663 GC content %: 40.733 | |
| Atauschii_AET4Gv20436400.14 AET4Gv20436400.14 |
Low | No | 4833 | OG0000176 | Get ORF Coding potential... Type: noncoding Potential: -1.155 Folding energies... MFEI: -26.828 AMFE: -0.670 GC content %: 40.037 | |
| Atauschii_AET4Gv20436400.15 AET4Gv20436400.15 |
Low | No | 3754 | OG0000176 | Get ORF Coding potential... Type: noncoding Potential: -1.148 Folding energies... MFEI: -27.179 AMFE: -0.670 GC content %: 40.570 | |
| Atauschii_AET4Gv20436400.16 AET4Gv20436400.16 |
Low | No | 4930 | OG0000176 | Get ORF Coding potential... Type: noncoding Potential: -1.155 Folding energies... MFEI: -26.651 AMFE: -0.669 GC content %: 39.817 | |
| Atauschii_AET4Gv20436400.17 AET4Gv20436400.17 |
Low | No | 4219 | OG0000176 | Get ORF Coding potential... Type: noncoding Potential: -1.151 Folding energies... MFEI: -26.518 AMFE: -0.642 GC content %: 41.313 | |
| Atauschii_AET4Gv20436400.18 AET4Gv20436400.18 |
Low | No | 4468 | OG0000176 | Get ORF Coding potential... Type: noncoding Potential: -1.341 Folding energies... MFEI: -25.264 AMFE: -0.683 GC content %: 36.996 | |
| Atauschii_AET4Gv20436400.19 AET4Gv20436400.19 |
Low | No | 2668 | OG0000176 | Get ORF Coding potential... Type: noncoding Potential: -1.305 Folding energies... MFEI: -26.214 AMFE: -0.657 GC content %: 39.880 | |
| Atauschii_AET4Gv20436400.20 AET4Gv20436400.20 |
Low | No | 3624 | OG0000176 | Get ORF Coding potential... Type: noncoding Potential: -1.206 Folding energies... MFEI: -24.950 AMFE: -0.656 GC content %: 38.024 | |
| Atauschii_AET4Gv20436400.21 AET4Gv20436400.21 |
Low | No | 4550 | OG0000176 | Get ORF Coding potential... Type: noncoding Potential: -1.273 Folding energies... MFEI: -24.925 AMFE: -0.690 GC content %: 36.132 | |
| Atauschii_AET4Gv20436400.22 AET4Gv20436400.22 |
Low | No | 4422 | OG0000176 | Get ORF Coding potential... Type: noncoding Potential: -1.230 Folding energies... MFEI: -24.751 AMFE: -0.686 GC content %: 36.070 | |
| Atauschii_AET4Gv20436400.23 AET4Gv20436400.23 |
Low | No | 569 | OG0000176 | Get ORF Coding potential... Type: noncoding Potential: -1.131 Folding energies... MFEI: -26.257 AMFE: -0.612 GC content %: 42.882 | |
| Atauschii_AET4Gv20436400.24 AET4Gv20436400.24 |
Low | No | 894 | OG0000176 | Get ORF Coding potential... Type: noncoding Potential: -1.187 Folding energies... MFEI: -26.477 AMFE: -0.638 GC content %: 41.499 | |
| Atauschii_AET4Gv20436400.25 AET4Gv20436400.25 |
High | No | 1575 | OG0000176 | Get ORF Coding potential... Type: noncoding Potential: -1.411 Folding energies... MFEI: -24.883 AMFE: -0.669 GC content %: 37.206 | |
| Atauschii_AET4Gv20436400.26 AET4Gv20436400.26 |
High | No | 380 | OG0074864 | Get ORF Coding potential... Type: noncoding Potential: -1.240 Folding energies... MFEI: -23.763 AMFE: -0.568 GC content %: 41.842 | |
| Atauschii_AET4Gv20436400.27 AET4Gv20436400.27 |
Low | No | 404 | OG0074865 | Get ORF Coding potential... Type: noncoding Potential: -1.130 Folding energies... MFEI: -24.431 AMFE: -0.574 GC content %: 42.574 | |
| Atauschii_AET4Gv20436400.28 AET4Gv20436400.28 |
Low | No | 969 | OG0000176 | Get ORF Coding potential... Type: noncoding Potential: -1.372 Folding energies... MFEI: -24.985 AMFE: -0.637 GC content %: 39.216 | |
| Atauschii_AET4Gv20436400.29 AET4Gv20436400.29 |
High | No | 380 | OG0074866 | Get ORF Coding potential... Type: noncoding Potential: -1.240 Folding energies... MFEI: -23.763 AMFE: -0.568 GC content %: 41.842 | |
| Atauschii_AET4Gv20436400.3 AET4Gv20436400.3 |
Low | No | 5106 | OG0000176 | Get ORF Coding potential... Type: noncoding Potential: -1.156 Folding energies... MFEI: -26.105 AMFE: -0.658 GC content %: 39.698 | |
| Atauschii_AET4Gv20436400.30 AET4Gv20436400.30 |
Low | No | 2623 | OG0000176 | Get ORF Coding potential... Type: noncoding Potential: -1.301 Folding energies... MFEI: -24.674 AMFE: -0.662 GC content %: 37.286 | |
| Atauschii_AET4Gv20436400.31 AET4Gv20436400.31 |
High | No | 2039 | OG0000176 | Get ORF Coding potential... Type: noncoding Potential: -1.231 Folding energies... MFEI: -24.223 AMFE: -0.641 GC content %: 37.813 | |
| Atauschii_AET4Gv20436400.32 AET4Gv20436400.32 |
High | No | 1580 | OG0000176 | Get ORF Coding potential... Type: noncoding Potential: -1.203 Folding energies... MFEI: -23.335 AMFE: -0.625 GC content %: 37.342 | |
| Atauschii_AET4Gv20436400.33 AET4Gv20436400.33 |
High | No | 1670 | OG0000176 | Get ORF Coding potential... Type: noncoding Potential: -1.207 Folding energies... MFEI: -23.066 AMFE: -0.617 GC content %: 37.365 | |
| Atauschii_AET4Gv20436400.34 AET4Gv20436400.34 |
High | No | 894 | OG0000176 | Get ORF Coding potential... Type: noncoding Potential: -1.285 Folding energies... MFEI: -25.391 AMFE: -0.612 GC content %: 41.499 | |
| Atauschii_AET4Gv20436400.35 AET4Gv20436400.35 |
High | No | 715 | OG0000176 | Get ORF Coding potential... Type: noncoding Potential: -1.246 Folding energies... MFEI: -21.860 AMFE: -0.599 GC content %: 36.503 | |
| Atauschii_AET4Gv20436400.36 AET4Gv20436400.36 |
High | No | 535 | OG0000176 | Get ORF Coding potential... Type: noncoding Potential: -1.175 Folding energies... MFEI: -21.963 AMFE: -0.579 GC content %: 37.944 | |
| Atauschii_AET4Gv20436400.4 AET4Gv20436400.4 |
Low | No | 5063 | OG0000176 | Get ORF Coding potential... Type: noncoding Potential: -1.156 Folding energies... MFEI: -26.569 AMFE: -0.665 GC content %: 39.976 | |
| Atauschii_AET4Gv20436400.5 AET4Gv20436400.5 |
Low | No | 5106 | OG0000176 | Get ORF Coding potential... Type: noncoding Potential: -1.156 Folding energies... MFEI: -26.624 AMFE: -0.665 GC content %: 40.031 | |
| Atauschii_AET4Gv20436400.6 AET4Gv20436400.6 |
Low | No | 3055 | OG0000176 | Get ORF Coding potential... Type: noncoding Potential: -1.141 Folding energies... MFEI: -28.049 AMFE: -0.643 GC content %: 43.633 | |
| Atauschii_AET4Gv20436400.7 AET4Gv20436400.7 |
Low | No | 3975 | OG0000176 | Get ORF Coding potential... Type: noncoding Potential: -1.149 Folding energies... MFEI: -26.818 AMFE: -0.664 GC content %: 40.403 | |
| Atauschii_AET4Gv20436400.8 AET4Gv20436400.8 |
Low | No | 4855 | OG0000176 | Get ORF Coding potential... Type: noncoding Potential: -1.155 Folding energies... MFEI: -26.618 AMFE: -0.666 GC content %: 39.979 | |
| Atauschii_AET4Gv20436400.9 AET4Gv20436400.9 |
Low | No | 5161 | OG0000176 | Get ORF Coding potential... Type: noncoding Potential: -1.156 Folding energies... MFEI: -26.379 AMFE: -0.665 GC content %: 39.682 |
Matches to external databases
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET4Gv20436400.24 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
| Atauschii_AET4Gv20436400.19 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
| Atauschii_AET4Gv20436400.14 | RepBase (RepeatMasker) | 2014-01-31 | DNA; LTR/Gypsy | |
| Atauschii_AET4Gv20436400.5 | RepBase (RepeatMasker) | 2014-01-31 | DNA; LTR/Gypsy | |
| Atauschii_AET4Gv20436400.27 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
| Atauschii_AET4Gv20436400.20 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
| Atauschii_AET4Gv20436400.15 | RepBase (RepeatMasker) | 2014-01-31 | DNA; LTR/Gypsy | |
| Atauschii_AET4Gv20436400.6 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
| Atauschii_AET4Gv20436400.1 | RepBase (RepeatMasker) | 2014-01-31 | DNA; LTR/Gypsy | |
| Atauschii_AET4Gv20436400.28 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy |
... further results
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
