Atauschii AET4Gv20437200
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET4Gv20437200 [ AET4Gv20437200] |
4D | 295361611 | 295366957 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET4Gv20437200.10 AET4Gv20437200.10 |
Low | No | 2391 | OG0000399 | Get ORF Coding potential... Type: noncoding Potential: -0.969 Folding energies... MFEI: -24.375 AMFE: -0.560 GC content %: 43.496 | |
| Atauschii_AET4Gv20437200.11 AET4Gv20437200.11 |
Low | No | 1643 | OG0000399 | Get ORF Coding potential... Type: noncoding Potential: -1.075 Folding energies... MFEI: -26.896 AMFE: -0.590 GC content %: 45.587 | |
| Atauschii_AET4Gv20437200.12 AET4Gv20437200.12 |
Low | No | 2821 | OG0000399 | Get ORF Coding potential... Type: noncoding Potential: -1.125 Folding energies... MFEI: -24.435 AMFE: -0.579 GC content %: 42.184 | |
| Atauschii_AET4Gv20437200.13 AET4Gv20437200.13 |
Low | No | 1840 | OG0000399 | Get ORF Coding potential... Type: noncoding Potential: -1.087 Folding energies... MFEI: -26.772 AMFE: -0.597 GC content %: 44.837 | |
| Atauschii_AET4Gv20437200.14 AET4Gv20437200.14 |
Low | No | 2703 | OG0000399 | Get ORF Coding potential... Type: noncoding Potential: -1.122 Folding energies... MFEI: -24.654 AMFE: -0.587 GC content %: 42.027 | |
| Atauschii_AET4Gv20437200.15 AET4Gv20437200.15 |
Low | No | 1363 | OG0000399 | Get ORF Coding potential... Type: noncoding Potential: -0.920 Folding energies... MFEI: -27.828 AMFE: -0.571 GC content %: 48.716 | |
| Atauschii_AET4Gv20437200.16 AET4Gv20437200.16 |
Low | No | 1155 | OG0000399 | Get ORF Coding potential... Type: noncoding Potential: -0.902 Folding energies... MFEI: -27.498 AMFE: -0.566 GC content %: 48.571 | |
| Atauschii_AET4Gv20437200.17 AET4Gv20437200.17 |
Low | No | 1247 | OG0000399 | Get ORF Coding potential... Type: noncoding Potential: -0.910 Folding energies... MFEI: -27.666 AMFE: -0.564 GC content %: 49.078 | |
| Atauschii_AET4Gv20437200.18 AET4Gv20437200.18 |
Low | No | 1182 | OG0000399 | Get ORF Coding potential... Type: noncoding Potential: -0.904 Folding energies... MFEI: -28.096 AMFE: -0.570 GC content %: 49.323 | |
| Atauschii_AET4Gv20437200.19 AET4Gv20437200.19 |
Low | No | 1818 | OG0000399 | Get ORF Coding potential... Type: noncoding Potential: -1.086 Folding energies... MFEI: -26.694 AMFE: -0.587 GC content %: 45.490 | |
| Atauschii_AET4Gv20437200.2 AET4Gv20437200.2 |
Low | No | 1303 | OG0000399 | Get ORF Coding potential... Type: noncoding Potential: -0.915 Folding energies... MFEI: -27.460 AMFE: -0.579 GC content %: 47.429 | |
| Atauschii_AET4Gv20437200.20 AET4Gv20437200.20 |
Low | No | 1122 | OG0000399 | Get ORF Coding potential... Type: noncoding Potential: -1.021 Folding energies... MFEI: -23.619 AMFE: -0.565 GC content %: 41.800 | |
| Atauschii_AET4Gv20437200.22 AET4Gv20437200.22 |
Low | No | 1706 | OG0000399 | Get ORF Coding potential... Type: noncoding Potential: -1.041 Folding energies... MFEI: -21.389 AMFE: -0.557 GC content %: 38.394 | |
| Atauschii_AET4Gv20437200.23 AET4Gv20437200.23 |
High | No | 566 | OG0000399 | Get ORF Coding potential... Type: noncoding Potential: -0.878 Folding energies... MFEI: -22.509 AMFE: -0.520 GC content %: 43.286 | |
| Atauschii_AET4Gv20437200.24 AET4Gv20437200.24 |
Low | No | 621 | OG0000399 | Get ORF Coding potential... Type: noncoding Potential: -0.823 Folding energies... MFEI: -28.003 AMFE: -0.556 GC content %: 50.403 | |
| Atauschii_AET4Gv20437200.25 AET4Gv20437200.25 |
Low | No | 504 | OG0000399 | Get ORF Coding potential... Type: noncoding Potential: -0.800 Folding energies... MFEI: -31.548 AMFE: -0.539 GC content %: 58.532 | |
| Atauschii_AET4Gv20437200.3 AET4Gv20437200.3 |
Low | No | 940 | OG0000399 | Get ORF Coding potential... Type: noncoding Potential: -0.877 Folding energies... MFEI: -29.415 AMFE: -0.585 GC content %: 50.319 | |
| Atauschii_AET4Gv20437200.4 AET4Gv20437200.4 |
Low | No | 1383 | OG0000399 | Get ORF Coding potential... Type: noncoding Potential: -1.051 Folding energies... MFEI: -27.751 AMFE: -0.599 GC content %: 46.349 | |
| Atauschii_AET4Gv20437200.5 AET4Gv20437200.5 |
Low | No | 834 | OG0000399 | Get ORF Coding potential... Type: noncoding Potential: -0.862 Folding energies... MFEI: -29.964 AMFE: -0.588 GC content %: 50.959 | |
| Atauschii_AET4Gv20437200.7 AET4Gv20437200.7 |
Low | No | 2544 | OG0000399 | Get ORF Coding potential... Type: noncoding Potential: -1.117 Folding energies... MFEI: -24.131 AMFE: -0.581 GC content %: 41.549 | |
| Atauschii_AET4Gv20437200.8 AET4Gv20437200.8 |
Low | No | 754 | OG0000399 | Get ORF Coding potential... Type: noncoding Potential: -0.946 Folding energies... MFEI: -21.631 AMFE: -0.513 GC content %: 42.175 | |
| Atauschii_AET4Gv20437200.9 AET4Gv20437200.9 |
Low | No | 1813 | OG0000399 | Get ORF Coding potential... Type: noncoding Potential: -1.086 Folding energies... MFEI: -26.630 AMFE: -0.588 GC content %: 45.284 |
Matches to external databases
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET4Gv20437200.18 | SwissProt | 2021-04-01 | Q9SZ77 | 2.5e-9 |
| Atauschii_AET4Gv20437200.13 | SwissProt | 2021-04-01 | Q7XWP3 | 1.9e-7 |
| Atauschii_AET4Gv20437200.8 | SwissProt | 2021-04-01 | Q7XWP3 | 8.35e-8 |
| Atauschii_AET4Gv20437200.25 | SwissProt | 2021-04-01 | Q7XWP3 | 2.82e-9 |
| Atauschii_AET4Gv20437200.19 | SwissProt | 2021-04-01 | Q9SZ77 | 3.71e-9 |
| Atauschii_AET4Gv20437200.14 | SwissProt | 2021-04-01 | Q7XWP3 | 4.66e-7 |
| Atauschii_AET4Gv20437200.9 | SwissProt | 2021-04-01 | Q7XWP3 | 1.67e-7 |
| Atauschii_AET4Gv20437200.3 | SwissProt | 2021-04-01 | Q7XWP3 | 6.36e-8 |
| Atauschii_AET4Gv20437200.2 | SwissProt | 2021-04-01 | Q7XWP3 | 1.45e-7 |
| Atauschii_AET4Gv20437200.15 | SwissProt | 2021-04-01 | Q7XWP3 | 1.12e-7 |
... further results
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
