Atauschii AET4Gv20447200
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET4Gv20447200 [ AET4Gv20447200] |
4D | 303938765 | 303942791 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET4Gv20447200.1 AET4Gv20447200.1 |
Low | No | 1108 | OG0000134 | Get ORF Coding potential... Type: noncoding Potential: -0.196 Folding energies... MFEI: -29.847 AMFE: -0.657 GC content %: 45.397 | |
| Atauschii_AET4Gv20447200.10 AET4Gv20447200.10 |
Low | No | 862 | OG0000134 | Get ORF Coding potential... Type: noncoding Potential: -0.254 Folding energies... MFEI: -28.677 AMFE: -0.659 GC content %: 43.503 | |
| Atauschii_AET4Gv20447200.11 AET4Gv20447200.11 |
Low | No | 1033 | OG0000134 | Get ORF Coding potential... Type: noncoding Potential: -0.276 Folding energies... MFEI: -30.755 AMFE: -0.612 GC content %: 50.242 | |
| Atauschii_AET4Gv20447200.12 AET4Gv20447200.12 |
Low | No | 2538 | OG0000134 | Get ORF Coding potential... Type: noncoding Potential: -0.315 Folding energies... MFEI: -28.369 AMFE: -0.652 GC content %: 43.499 | |
| Atauschii_AET4Gv20447200.13 AET4Gv20447200.13 |
Low | No | 1205 | OG0000134 | Get ORF Coding potential... Type: noncoding Potential: -0.157 Folding energies... MFEI: -30.398 AMFE: -0.620 GC content %: 49.046 | |
| Atauschii_AET4Gv20447200.14 AET4Gv20447200.14 |
Low | No | 2224 | OG0000134 | Get ORF Coding potential... Type: noncoding Potential: -0.290 Folding energies... MFEI: -28.295 AMFE: -0.656 GC content %: 43.121 | |
| Atauschii_AET4Gv20447200.15 AET4Gv20447200.15 |
Low | No | 2276 | OG0000134 | Get ORF Coding potential... Type: noncoding Potential: -0.301 Folding energies... MFEI: -28.423 AMFE: -0.670 GC content %: 42.443 | |
| Atauschii_AET4Gv20447200.16 AET4Gv20447200.16 |
Low | No | 2550 | OG0000134 | Get ORF Coding potential... Type: noncoding Potential: -0.315 Folding energies... MFEI: -28.239 AMFE: -0.649 GC content %: 43.529 | |
| Atauschii_AET4Gv20447200.17 AET4Gv20447200.17 |
Low | No | 2684 | OG0000134 | Get ORF Coding potential... Type: noncoding Potential: -0.376 Folding energies... MFEI: -26.770 AMFE: -0.651 GC content %: 41.133 | |
| Atauschii_AET4Gv20447200.18 AET4Gv20447200.18 |
Low | No | 1115 | OG0000134 | Get ORF Coding potential... Type: noncoding Potential: -0.197 Folding energies... MFEI: -30.152 AMFE: -0.596 GC content %: 50.583 | |
| Atauschii_AET4Gv20447200.19 AET4Gv20447200.19 |
Low | No | 1806 | OG0000134 | Get ORF Coding potential... Type: noncoding Potential: -0.273 Folding energies... MFEI: -29.064 AMFE: -0.684 GC content %: 42.470 | |
| Atauschii_AET4Gv20447200.2 AET4Gv20447200.2 |
Low | No | 1250 | OG0000134 | Get ORF Coding potential... Type: noncoding Potential: -0.207 Folding energies... MFEI: -30.368 AMFE: -0.622 GC content %: 48.800 | |
| Atauschii_AET4Gv20447200.20 AET4Gv20447200.20 |
Low | No | 2304 | OG0000134 | Get ORF Coding potential... Type: noncoding Potential: -0.302 Folding energies... MFEI: -28.034 AMFE: -0.652 GC content %: 43.012 | |
| Atauschii_AET4Gv20447200.21 AET4Gv20447200.21 |
Low | No | 1086 | OG0000134 | Get ORF Coding potential... Type: noncoding Potential: -0.217 Folding energies... MFEI: -30.129 AMFE: -0.592 GC content %: 50.921 | |
| Atauschii_AET4Gv20447200.22 AET4Gv20447200.22 |
Low | No | 606 | OG0000134 | Get ORF Coding potential... Type: noncoding Potential: -0.107 Folding energies... MFEI: -26.881 AMFE: -0.657 GC content %: 40.924 | |
| Atauschii_AET4Gv20447200.23 AET4Gv20447200.23 |
Low | No | 422 | OG0000134 | Get ORF Coding potential... Type: noncoding Potential: -0.103 Folding energies... MFEI: -27.464 AMFE: -0.620 GC content %: 44.313 | |
| Atauschii_AET4Gv20447200.24 AET4Gv20447200.24 |
Low | No | 1828 | OG0000134 | Get ORF Coding potential... Type: noncoding Potential: -0.256 Folding energies... MFEI: -28.370 AMFE: -0.629 GC content %: 45.131 | |
| Atauschii_AET4Gv20447200.25 AET4Gv20447200.25 |
Low | No | 1944 | OG0000134 | Get ORF Coding potential... Type: noncoding Potential: -0.338 Folding energies... MFEI: -27.197 AMFE: -0.691 GC content %: 39.352 | |
| Atauschii_AET4Gv20447200.26 AET4Gv20447200.26 |
Low | No | 1184 | OG0000134 | Get ORF Coding potential... Type: noncoding Potential: -0.204 Folding energies... MFEI: -29.459 AMFE: -0.553 GC content %: 53.294 | |
| Atauschii_AET4Gv20447200.27 AET4Gv20447200.27 |
Low | No | 2820 | OG0000134 | Get ORF Coding potential... Type: noncoding Potential: -0.324 Folding energies... MFEI: -26.691 AMFE: -0.627 GC content %: 42.589 | |
| Atauschii_AET4Gv20447200.28 AET4Gv20447200.28 |
Low | No | 1724 | OG0000134 | Get ORF Coding potential... Type: noncoding Potential: -0.260 Folding energies... MFEI: -27.193 AMFE: -0.579 GC content %: 46.926 | |
| Atauschii_AET4Gv20447200.29 AET4Gv20447200.29 |
Low | No | 1011 | OG0000134 | Get ORF Coding potential... Type: noncoding Potential: -0.227 Folding energies... MFEI: -29.001 AMFE: -0.663 GC content %: 43.719 | |
| Atauschii_AET4Gv20447200.3 AET4Gv20447200.3 |
Low | No | 1418 | OG0000134 | Get ORF Coding potential... Type: noncoding Potential: -0.137 Folding energies... MFEI: -27.616 AMFE: -0.697 GC content %: 39.633 | |
| Atauschii_AET4Gv20447200.30 AET4Gv20447200.30 |
Low | No | 909 | OG0000134 | Get ORF Coding potential... Type: noncoding Potential: -0.212 Folding energies... MFEI: -28.889 AMFE: -0.647 GC content %: 44.664 | |
| Atauschii_AET4Gv20447200.31 AET4Gv20447200.31 |
Low | No | 682 | OG0000134 | Get ORF Coding potential... Type: noncoding Potential: -0.126 Folding energies... MFEI: -29.018 AMFE: -0.554 GC content %: 52.346 | |
| Atauschii_AET4Gv20447200.32 AET4Gv20447200.32 |
Low | No | 474 | OG0000134 | Get ORF Coding potential... Type: noncoding Potential: -0.386 Folding energies... MFEI: -28.481 AMFE: -0.634 GC content %: 44.937 | |
| Atauschii_AET4Gv20447200.33 AET4Gv20447200.33 |
Low | No | 985 | OG0000134 | Get ORF Coding potential... Type: noncoding Potential: -0.213 Folding energies... MFEI: -30.812 AMFE: -0.585 GC content %: 52.690 | |
| Atauschii_AET4Gv20447200.34 AET4Gv20447200.34 |
Low | No | 714 | OG0000134 | Get ORF Coding potential... Type: noncoding Potential: -1.127 Folding energies... MFEI: -26.541 AMFE: -0.623 GC content %: 42.577 | |
| Atauschii_AET4Gv20447200.35 AET4Gv20447200.35 |
Low | No | 580 | OG0000134 | Get ORF Coding potential... Type: noncoding Potential: -0.958 Folding energies... MFEI: -29.636 AMFE: -0.527 GC content %: 56.207 | |
| Atauschii_AET4Gv20447200.4 AET4Gv20447200.4 |
Low | No | 2692 | OG0000134 | Get ORF Coding potential... Type: noncoding Potential: -0.311 Folding energies... MFEI: -27.036 AMFE: -0.655 GC content %: 41.270 | |
| Atauschii_AET4Gv20447200.5 AET4Gv20447200.5 |
Low | No | 3024 | OG0000134 | Get ORF Coding potential... Type: noncoding Potential: -0.337 Folding energies... MFEI: -27.212 AMFE: -0.652 GC content %: 41.766 | |
| Atauschii_AET4Gv20447200.6 AET4Gv20447200.6 |
Low | No | 1239 | OG0000134 | Get ORF Coding potential... Type: noncoding Potential: -0.206 Folding energies... MFEI: -30.492 AMFE: -0.622 GC content %: 48.991 | |
| Atauschii_AET4Gv20447200.7 AET4Gv20447200.7 |
Low | No | 2116 | OG0000134 | Get ORF Coding potential... Type: noncoding Potential: -0.208 Folding energies... MFEI: -26.923 AMFE: -0.641 GC content %: 42.013 | |
| Atauschii_AET4Gv20447200.8 AET4Gv20447200.8 |
Low | No | 1056 | OG0000134 | Get ORF Coding potential... Type: noncoding Potential: -0.230 Folding energies... MFEI: -30.189 AMFE: -0.595 GC content %: 50.758 | |
| Atauschii_AET4Gv20447200.9 AET4Gv20447200.9 |
Low | No | 544 | OG0000134 | Get ORF Coding potential... Type: noncoding Potential: -0.290 Folding energies... MFEI: -28.732 AMFE: -0.677 GC content %: 42.463 |
Matches to external databases
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET4Gv20447200.8 | SwissProt | 2021-04-01 | Q6AT33 | 1.22e-16 |
| Atauschii_AET4Gv20447200.10 | SwissProt | 2021-04-01 | Q6AT33 | 8.32e-4 |
| Atauschii_AET4Gv20447200.25 | SwissProt | 2021-04-01 | Q6AT33 | 5.62e-16 |
| Atauschii_AET4Gv20447200.20 | SwissProt | 2021-04-01 | Q6AT33 | 3.35e-18 |
| Atauschii_AET4Gv20447200.35 | SwissProt | 2021-04-01 | A2WTQ5 | 2.31e-7 |
| Atauschii_AET4Gv20447200.16 | SwissProt | 2021-04-01 | Q6AT33 | 3.76e-18 |
| Atauschii_AET4Gv20447200.30 | SwissProt | 2021-04-01 | Q6AT33 | 1.2e-18 |
| Atauschii_AET4Gv20447200.9 | SwissProt | 2021-04-01 | Q6AT33 | 3.75e-20 |
| Atauschii_AET4Gv20447200.11 | SwissProt | 2021-04-01 | Q6AT33 | 4.27e-18 |
| Atauschii_AET4Gv20447200.26 | SwissProt | 2021-04-01 | Q6AT33 | 6.62e-19 |
... further results
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
