GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET4Gv20478900 [ AET4Gv20478900]	4D	327612536	327624296	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET4Gv20478900.1 AET4Gv20478900.1	Low	Yes	2313	OG0025347		Get ORF Coding potential... Type: noncoding Potential: -0.957 Folding energies... MFEI: -29.351 AMFE: -0.678 GC content %: 43.277
Atauschii_AET4Gv20478900.17 AET4Gv20478900.17	High	No	348	OG0074946		Get ORF Coding potential... Type: noncoding Potential: -1.030 Folding energies... MFEI: -37.011 AMFE: -0.634 GC content %: 58.333

Matches to external databases

The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias	Database	Version	Hit	Evalue
Atauschii_AET4Gv20478900.1	Rfam	14.6	MIR1122	6.1e-6

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).