Atauschii AET4Gv20482500
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET4Gv20482500 [ AET4Gv20482500] |
4D | 330242812 | 330243765 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET4Gv20482500.1 AET4Gv20482500.1 |
Low | No | 231 | OG0074952 | Get ORF Coding potential... Type: noncoding Potential: -1.362 Folding energies... MFEI: -29.394 AMFE: -0.601 GC content %: 48.918 | |
| Atauschii_AET4Gv20482500.2 AET4Gv20482500.2 |
Low | No | 247 | OG0000318 | Get ORF Coding potential... Type: noncoding Potential: -0.810 Folding energies... MFEI: -29.393 AMFE: -0.631 GC content %: 46.559 | |
| Atauschii_AET4Gv20482500.3 AET4Gv20482500.3 |
Low | No | 234 | OG0000318 | Get ORF Coding potential... Type: noncoding Potential: -0.782 Folding energies... MFEI: -26.667 AMFE: -0.618 GC content %: 43.162 | |
| Atauschii_AET4Gv20482500.4 AET4Gv20482500.4 |
Low | No | 310 | OG0000860 | Get ORF Coding potential... Type: noncoding Potential: -1.013 Folding energies... MFEI: -29.903 AMFE: -0.657 GC content %: 45.484 | |
| Atauschii_AET4Gv20482500.6 AET4Gv20482500.6 |
Low | No | 270 | OG0000014 | Get ORF Coding potential... Type: noncoding Potential: -1.148 Folding energies... MFEI: -31.333 AMFE: -0.651 GC content %: 48.148 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET4Gv20482500.1 | RepBase (RepeatMasker) | 2014-01-31 | DNA/PIF-Harbinger | |
| Atauschii_AET4Gv20482500.2 | RepBase (RepeatMasker) | 2014-01-31 | DNA/PIF-Harbinger | |
| Atauschii_AET4Gv20482500.3 | RepBase (RepeatMasker) | 2014-01-31 | DNA/PIF-Harbinger | |
| Atauschii_AET4Gv20482500.4 | RepBase (RepeatMasker) | 2014-01-31 | DNA/PIF-Harbinger | |
| Atauschii_AET4Gv20482500.6 | RepBase (RepeatMasker) | 2014-01-31 | DNA/PIF-Harbinger |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
