Atauschii AET4Gv20506700
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET4Gv20506700 [ AET4Gv20506700] |
4D | 348105269 | 348110469 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET4Gv20506700.1 AET4Gv20506700.1 |
Low | No | 2304 | OG0000777 | Get ORF Coding potential... Type: noncoding Potential: -0.236 Folding energies... MFEI: -31.536 AMFE: -0.660 GC content %: 47.786 | |
| Atauschii_AET4Gv20506700.10 AET4Gv20506700.10 |
Low | No | 2552 | OG0000777 | Get ORF Coding potential... Type: noncoding Potential: -0.104 Folding energies... MFEI: -27.962 AMFE: -0.657 GC content %: 42.555 | |
| Atauschii_AET4Gv20506700.11 AET4Gv20506700.11 |
Low | No | 2357 | OG0000777 | Get ORF Coding potential... Type: noncoding Potential: -0.168 Folding energies... MFEI: -28.787 AMFE: -0.655 GC content %: 43.954 | |
| Atauschii_AET4Gv20506700.12 AET4Gv20506700.12 |
Low | No | 1352 | OG0000777 | Get ORF Coding potential... Type: noncoding Potential: -0.108 Folding energies... MFEI: -32.241 AMFE: -0.648 GC content %: 49.778 | |
| Atauschii_AET4Gv20506700.13 AET4Gv20506700.13 |
Low | No | 2185 | OG0000777 | Get ORF Coding potential... Type: noncoding Potential: -0.425 Folding energies... MFEI: -28.645 AMFE: -0.660 GC content %: 43.432 | |
| Atauschii_AET4Gv20506700.14 AET4Gv20506700.14 |
Low | No | 2162 | OG0000777 | Get ORF Coding potential... Type: noncoding Potential: -0.492 Folding energies... MFEI: -27.567 AMFE: -0.645 GC content %: 42.738 | |
| Atauschii_AET4Gv20506700.15 AET4Gv20506700.15 |
Low | No | 1415 | OG0000777 | Get ORF Coding potential... Type: noncoding Potential: -0.425 Folding energies... MFEI: -30.254 AMFE: -0.644 GC content %: 46.996 | |
| Atauschii_AET4Gv20506700.16 AET4Gv20506700.16 |
Low | No | 339 | OG0000777 | Get ORF Coding potential... Type: noncoding Potential: -0.343 Folding energies... MFEI: -19.499 AMFE: -0.529 GC content %: 36.873 | |
| Atauschii_AET4Gv20506700.2 AET4Gv20506700.2 |
Low | No | 1851 | OG0000777 | Get ORF Coding potential... Type: noncoding Potential: -0.153 Folding energies... MFEI: -33.155 AMFE: -0.665 GC content %: 49.865 | |
| Atauschii_AET4Gv20506700.3 AET4Gv20506700.3 |
Low | No | 3216 | OG0000777 | Get ORF Coding potential... Type: noncoding Potential: -0.124 Folding energies... MFEI: -29.303 AMFE: -0.662 GC content %: 44.248 | |
| Atauschii_AET4Gv20506700.4 AET4Gv20506700.4 |
Low | No | 3963 | OG0000777 | Get ORF Coding potential... Type: noncoding Potential: -0.129 Folding energies... MFEI: -29.309 AMFE: -0.674 GC content %: 43.502 | |
| Atauschii_AET4Gv20506700.5 AET4Gv20506700.5 |
Low | No | 2163 | OG0000777 | Get ORF Coding potential... Type: noncoding Potential: -0.175 Folding energies... MFEI: -32.067 AMFE: -0.668 GC content %: 47.989 | |
| Atauschii_AET4Gv20506700.6 AET4Gv20506700.6 |
Low | No | 1910 | OG0000777 | Get ORF Coding potential... Type: noncoding Potential: -0.158 Folding energies... MFEI: -33.634 AMFE: -0.669 GC content %: 50.262 | |
| Atauschii_AET4Gv20506700.7 AET4Gv20506700.7 |
Low | No | 1439 | OG0000777 | Get ORF Coding potential... Type: noncoding Potential: -0.133 Folding energies... MFEI: -36.233 AMFE: -0.671 GC content %: 53.996 | |
| Atauschii_AET4Gv20506700.8 AET4Gv20506700.8 |
Low | No | 2651 | OG0000777 | Get ORF Coding potential... Type: noncoding Potential: -0.110 Folding energies... MFEI: -29.076 AMFE: -0.664 GC content %: 43.757 | |
| Atauschii_AET4Gv20506700.9 AET4Gv20506700.9 |
Low | No | 3404 | OG0000777 | Get ORF Coding potential... Type: noncoding Potential: -0.082 Folding energies... MFEI: -27.568 AMFE: -0.657 GC content %: 41.980 |
Matches to external databases
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET4Gv20506700.4 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Atauschii_AET4Gv20506700.12 | SwissProt | 2021-04-01 | U3KRF2 | 5.42e-14 |
| Atauschii_AET4Gv20506700.8 | SwissProt | 2021-04-01 | U3KRF2 | 1.9e-13 |
| Atauschii_AET4Gv20506700.3 | SwissProt | 2021-04-01 | U3KRF2 | 2.49e-13 |
| Atauschii_AET4Gv20506700.8 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Atauschii_AET4Gv20506700.13 | SwissProt | 2021-04-01 | Q8RU74 | 8.55e-15 |
| Atauschii_AET4Gv20506700.9 | SwissProt | 2021-04-01 | Q8RU74 | 1.64e-14 |
| Atauschii_AET4Gv20506700.4 | SwissProt | 2021-04-01 | U3KRF2 | 4.18e-13 |
| Atauschii_AET4Gv20506700.9 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Atauschii_AET4Gv20506700.14 | SwissProt | 2021-04-01 | U3KRF2 | 1.39e-13 |
... further results
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
