GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET4Gv20518700 [ AET4Gv20518700]	4D	357715363	357721803	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET4Gv20518700.15 AET4Gv20518700.15	High	No	424	OG0075020		Get ORF Coding potential... Type: noncoding Potential: -0.883 Folding energies... MFEI: -24.245 AMFE: -0.591 GC content %: 41.038
Atauschii_AET4Gv20518700.20 AET4Gv20518700.20	High	No	1449	OG0016366		Get ORF Coding potential... Type: noncoding Potential: -0.651 Folding energies... MFEI: -27.957 AMFE: -0.629 GC content %: 44.444
Atauschii_AET4Gv20518700.21 AET4Gv20518700.21	High	No	595	OG0075021		Get ORF Coding potential... Type: noncoding Potential: -0.614 Folding energies... MFEI: -23.580 AMFE: -0.600 GC content %: 39.328
Atauschii_AET4Gv20518700.22 AET4Gv20518700.22	Low	No	1033	OG0016366		Get ORF Coding potential... Type: coding Potential: 0.072 Folding energies... MFEI: -30.716 AMFE: -0.640 GC content %: 48.015

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).