Atauschii AET4Gv20526200
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET4Gv20526200 [ AET4Gv20526200] |
4D | 362988171 | 362990947 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET4Gv20526200.1 AET4Gv20526200.1 |
Low | No | 2167 | OG0002921 | Get ORF Coding potential... Type: noncoding Potential: -0.365 Folding energies... MFEI: -33.978 AMFE: -0.689 GC content %: 49.285 | |
| Atauschii_AET4Gv20526200.2 AET4Gv20526200.2 |
Low | No | 2121 | OG0002921 | Get ORF Coding potential... Type: noncoding Potential: -0.362 Folding energies... MFEI: -33.701 AMFE: -0.680 GC content %: 49.552 | |
| Atauschii_AET4Gv20526200.3 AET4Gv20526200.3 |
Low | No | 2169 | OG0002921 | Get ORF Coding potential... Type: noncoding Potential: -0.365 Folding energies... MFEI: -33.490 AMFE: -0.686 GC content %: 48.824 | |
| Atauschii_AET4Gv20526200.4 AET4Gv20526200.4 |
Low | No | 2020 | OG0002921 | Get ORF Coding potential... Type: noncoding Potential: -0.384 Folding energies... MFEI: -33.678 AMFE: -0.677 GC content %: 49.752 | |
| Atauschii_AET4Gv20526200.5 AET4Gv20526200.5 |
Low | No | 2015 | OG0002921 | Get ORF Coding potential... Type: noncoding Potential: -0.333 Folding energies... MFEI: -33.727 AMFE: -0.678 GC content %: 49.727 | |
| Atauschii_AET4Gv20526200.6 AET4Gv20526200.6 |
Low | No | 2104 | OG0002921 | Get ORF Coding potential... Type: noncoding Potential: -0.361 Folding energies... MFEI: -33.275 AMFE: -0.681 GC content %: 48.859 | |
| Atauschii_AET4Gv20526200.7 AET4Gv20526200.7 |
Low | No | 2194 | OG0002921 | Get ORF Coding potential... Type: noncoding Potential: -0.340 Folding energies... MFEI: -32.284 AMFE: -0.669 GC content %: 48.268 | |
| Atauschii_AET4Gv20526200.8 AET4Gv20526200.8 |
Low | No | 1473 | OG0002921 | Get ORF Coding potential... Type: noncoding Potential: -0.376 Folding energies... MFEI: -29.783 AMFE: -0.666 GC content %: 44.739 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET4Gv20526200.5 | SwissProt | 2021-04-01 | Q9SZL8 | 6.41e-15 |
| Atauschii_AET4Gv20526200.6 | SwissProt | 2021-04-01 | Q9SZL8 | 4.38e-15 |
| Atauschii_AET4Gv20526200.1 | SwissProt | 2021-04-01 | Q9SZL8 | 4.63e-15 |
| Atauschii_AET4Gv20526200.7 | SwissProt | 2021-04-01 | Q9SZL8 | 7.55e-15 |
| Atauschii_AET4Gv20526200.2 | SwissProt | 2021-04-01 | Q9SZL8 | 4.46e-15 |
| Atauschii_AET4Gv20526200.8 | SwissProt | 2021-04-01 | Q9SZL8 | 1.83e-15 |
| Atauschii_AET4Gv20526200.3 | SwissProt | 2021-04-01 | Q9SZL8 | 4.64e-15 |
| Atauschii_AET4Gv20526200.4 | SwissProt | 2021-04-01 | Q9SZL8 | 2.74e-14 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
