Atauschii AET4Gv20527200
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET4Gv20527200 [ AET4Gv20527200] |
4D | 363151604 | 363162659 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET4Gv20527200.15 AET4Gv20527200.15 |
Low | No | 5851 | OG0000324 | Get ORF Coding potential... Type: noncoding Potential: -1.187 Folding energies... MFEI: -29.306 AMFE: -0.677 GC content %: 43.258 | |
| Atauschii_AET4Gv20527200.16 AET4Gv20527200.16 |
Low | No | 4852 | OG0000324 | Get ORF Coding potential... Type: noncoding Potential: -1.118 Folding energies... MFEI: -30.047 AMFE: -0.671 GC content %: 44.765 | |
| Atauschii_AET4Gv20527200.17 AET4Gv20527200.17 |
Low | No | 2829 | OG0000324 | Get ORF Coding potential... Type: noncoding Potential: -1.114 Folding energies... MFEI: -31.251 AMFE: -0.656 GC content %: 47.614 | |
| Atauschii_AET4Gv20527200.18 AET4Gv20527200.18 |
Low | No | 3029 | OG0000324 | Get ORF Coding potential... Type: noncoding Potential: -1.123 Folding energies... MFEI: -32.166 AMFE: -0.671 GC content %: 47.970 | |
| Atauschii_AET4Gv20527200.21 AET4Gv20527200.21 |
Low | No | 4188 | OG0000324 | Get ORF Coding potential... Type: noncoding Potential: -0.924 Folding energies... MFEI: -29.549 AMFE: -0.675 GC content %: 43.744 | |
| Atauschii_AET4Gv20527200.22 AET4Gv20527200.22 |
Low | No | 5917 | OG0000324 | Get ORF Coding potential... Type: noncoding Potential: -0.843 Folding energies... MFEI: -28.802 AMFE: -0.673 GC content %: 42.792 | |
| Atauschii_AET4Gv20527200.25 AET4Gv20527200.25 |
Low | No | 724 | OG0000324 | Get ORF Coding potential... Type: noncoding Potential: -0.808 Folding energies... MFEI: -32.459 AMFE: -0.588 GC content %: 55.249 | |
| Atauschii_AET4Gv20527200.26 AET4Gv20527200.26 |
Low | No | 1519 | OG0000324 | Get ORF Coding potential... Type: noncoding Potential: -0.995 Folding energies... MFEI: -27.834 AMFE: -0.615 GC content %: 45.293 | |
| Atauschii_AET4Gv20527200.27 AET4Gv20527200.27 |
Low | No | 2290 | OG0000324 | Get ORF Coding potential... Type: noncoding Potential: -1.258 Folding energies... MFEI: -29.550 AMFE: -0.651 GC content %: 45.415 | |
| Atauschii_AET4Gv20527200.29 AET4Gv20527200.29 |
Low | No | 1389 | OG0000324 | Get ORF Coding potential... Type: noncoding Potential: -1.035 Folding energies... MFEI: -30.756 AMFE: -0.643 GC content %: 47.804 | |
| Atauschii_AET4Gv20527200.31 AET4Gv20527200.31 |
Low | No | 471 | OG0000324 | Get ORF Coding potential... Type: noncoding Potential: -1.306 Folding energies... MFEI: -23.970 AMFE: -0.576 GC content %: 41.614 | |
| Atauschii_AET4Gv20527200.32 AET4Gv20527200.32 |
High | No | 956 | OG0000324 | Get ORF Coding potential... Type: noncoding Potential: -1.019 Folding energies... MFEI: -29.132 AMFE: -0.632 GC content %: 46.130 | |
| Atauschii_AET4Gv20527200.33 AET4Gv20527200.33 |
High | No | 1797 | OG0000324 | Get ORF Coding potential... Type: noncoding Potential: -1.100 Folding energies... MFEI: -30.273 AMFE: -0.662 GC content %: 45.743 | |
| Atauschii_AET4Gv20527200.35 AET4Gv20527200.35 |
High | No | 1905 | OG0000324 | Get ORF Coding potential... Type: noncoding Potential: -1.121 Folding energies... MFEI: -29.801 AMFE: -0.660 GC content %: 45.144 | |
| Atauschii_AET4Gv20527200.36 AET4Gv20527200.36 |
High | No | 2217 | OG0000324 | Get ORF Coding potential... Type: noncoding Potential: -1.089 Folding energies... MFEI: -28.191 AMFE: -0.655 GC content %: 43.031 | |
| Atauschii_AET4Gv20527200.37 AET4Gv20527200.37 |
High | No | 1179 | OG0000324 | Get ORF Coding potential... Type: noncoding Potential: -1.304 Folding energies... MFEI: -28.287 AMFE: -0.656 GC content %: 43.087 | |
| Atauschii_AET4Gv20527200.38 AET4Gv20527200.38 |
High | No | 2098 | OG0000324 | Get ORF Coding potential... Type: noncoding Potential: -1.083 Folding energies... MFEI: -25.634 AMFE: -0.671 GC content %: 38.227 | |
| Atauschii_AET4Gv20527200.39 AET4Gv20527200.39 |
High | No | 2289 | OG0000324 | Get ORF Coding potential... Type: noncoding Potential: -1.092 Folding energies... MFEI: -25.946 AMFE: -0.672 GC content %: 38.619 | |
| Atauschii_AET4Gv20527200.40 AET4Gv20527200.40 |
High | No | 893 | OG0000324 | Get ORF Coding potential... Type: noncoding Potential: -1.303 Folding energies... MFEI: -29.686 AMFE: -0.669 GC content %: 44.345 | |
| Atauschii_AET4Gv20527200.41 AET4Gv20527200.41 |
High | No | 738 | OG0000324 | Get ORF Coding potential... Type: noncoding Potential: -1.291 Folding energies... MFEI: -29.675 AMFE: -0.664 GC content %: 44.715 | |
| Atauschii_AET4Gv20527200.5 AET4Gv20527200.5 |
Low | No | 2623 | OG0000324 | Get ORF Coding potential... Type: noncoding Potential: -1.103 Folding energies... MFEI: -35.082 AMFE: -0.678 GC content %: 51.773 | |
| Atauschii_AET4Gv20527200.7 AET4Gv20527200.7 |
Low | No | 2035 | OG0000324 | Get ORF Coding potential... Type: noncoding Potential: -1.062 Folding energies... MFEI: -35.764 AMFE: -0.677 GC content %: 52.826 | |
| Atauschii_AET4Gv20527200.9 AET4Gv20527200.9 |
Low | No | 3920 | OG0000324 | Get ORF Coding potential... Type: noncoding Potential: -1.141 Folding energies... MFEI: -31.926 AMFE: -0.669 GC content %: 47.755 |
Matches to external databases
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET4Gv20527200.21 | SwissProt | 2021-04-01 | O23596 | 7.54e-5 |
| Atauschii_AET4Gv20527200.27 | RepBase (RepeatMasker) | 2014-01-31 | LINE/L1 | |
| Atauschii_AET4Gv20527200.16 | RepBase (RepeatMasker) | 2014-01-31 | LINE/L1 | |
| Atauschii_AET4Gv20527200.31 | SwissProt | 2021-04-01 | Q9SR22 | 3.17e-6 |
| Atauschii_AET4Gv20527200.22 | SwissProt | 2021-04-01 | O23596 | 6.81e-9 |
| Atauschii_AET4Gv20527200.9 | RepBase (RepeatMasker) | 2014-01-31 | LINE/L1 | |
| Atauschii_AET4Gv20527200.15 | SwissProt | 2021-04-01 | O23596 | 5.41e-9 |
| Atauschii_AET4Gv20527200.17 | RepBase (RepeatMasker) | 2014-01-31 | LINE/L1 | |
| Atauschii_AET4Gv20527200.5 | SwissProt | 2021-04-01 | O23596 | 2.31e-9 |
| Atauschii_AET4Gv20527200.25 | SwissProt | 2021-04-01 | O23596 | 2.86e-10 |
... further results
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
