GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET4Gv20527900 [ AET4Gv20527900]	4D	363865830	363873328	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET4Gv20527900.1 AET4Gv20527900.1	Low	No	1371	OG0075036		Get ORF Coding potential... Type: noncoding Potential: -1.175 Folding energies... MFEI: -25.689 AMFE: -0.635 GC content %: 40.481
Atauschii_AET4Gv20527900.2 AET4Gv20527900.2	High	No	1136	OG0010007		Get ORF Coding potential... Type: noncoding Potential: -0.860 Folding energies... MFEI: -27.482 AMFE: -0.638 GC content %: 43.046
Atauschii_AET4Gv20527900.3 AET4Gv20527900.3	High	No	217	OG0016369		Get ORF Coding potential... Type: noncoding Potential: -1.062 Folding energies... MFEI: -28.203 AMFE: -0.618 GC content %: 45.622
Atauschii_AET4Gv20527900.4 AET4Gv20527900.4	High	No	268	OG0016369		Get ORF Coding potential... Type: noncoding Potential: -1.122 Folding energies... MFEI: -27.985 AMFE: -0.652 GC content %: 42.910
Atauschii_AET4Gv20527900.5 AET4Gv20527900.5	High	No	214	OG0016369		Get ORF Coding potential... Type: noncoding Potential: -1.146 Folding energies... MFEI: -28.785 AMFE: -0.635 GC content %: 45.327
Atauschii_AET4Gv20527900.6 AET4Gv20527900.6	High	No	929	OG0010007		Get ORF Coding potential... Type: noncoding Potential: -1.266 Folding energies... MFEI: -24.327 AMFE: -0.630 GC content %: 38.644

Matches to external databases

The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias	Database	Version	Hit	Evalue
Atauschii_AET4Gv20527900.1	RepBase (RepeatMasker)	2014-01-31	DNA/TcMar-Stowaway

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).