Atauschii AET4Gv20529800
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET4Gv20529800 [ AET4Gv20529800] |
4D | 365488866 | 365494729 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET4Gv20529800.1 AET4Gv20529800.1 |
Low | No | 2636 | OG0000017 | Get ORF Coding potential... Type: noncoding Potential: -1.019 Folding energies... MFEI: -26.696 AMFE: -0.631 GC content %: 42.299 | |
| Atauschii_AET4Gv20529800.10 AET4Gv20529800.10 |
Low | No | 3326 | OG0000017 | Get ORF Coding potential... Type: noncoding Potential: -0.959 Folding energies... MFEI: -26.936 AMFE: -0.667 GC content %: 40.409 | |
| Atauschii_AET4Gv20529800.11 AET4Gv20529800.11 |
Low | No | 3105 | OG0000017 | Get ORF Coding potential... Type: noncoding Potential: -0.953 Folding energies... MFEI: -26.783 AMFE: -0.661 GC content %: 40.548 | |
| Atauschii_AET4Gv20529800.12 AET4Gv20529800.12 |
Low | No | 2802 | OG0000017 | Get ORF Coding potential... Type: noncoding Potential: -1.025 Folding energies... MFEI: -26.981 AMFE: -0.651 GC content %: 41.435 | |
| Atauschii_AET4Gv20529800.13 AET4Gv20529800.13 |
Low | No | 2419 | OG0000017 | Get ORF Coding potential... Type: noncoding Potential: -1.067 Folding energies... MFEI: -27.048 AMFE: -0.642 GC content %: 42.125 | |
| Atauschii_AET4Gv20529800.14 AET4Gv20529800.14 |
Low | No | 2865 | OG0000017 | Get ORF Coding potential... Type: noncoding Potential: -1.076 Folding energies... MFEI: -26.866 AMFE: -0.650 GC content %: 41.361 | |
| Atauschii_AET4Gv20529800.15 AET4Gv20529800.15 |
Low | No | 3045 | OG0000017 | Get ORF Coding potential... Type: noncoding Potential: -0.965 Folding energies... MFEI: -27.396 AMFE: -0.668 GC content %: 40.985 | |
| Atauschii_AET4Gv20529800.16 AET4Gv20529800.16 |
High | No | 2089 | OG0000017 | Get ORF Coding potential... Type: noncoding Potential: -0.909 Folding energies... MFEI: -28.229 AMFE: -0.649 GC content %: 43.514 | |
| Atauschii_AET4Gv20529800.17 AET4Gv20529800.17 |
High | No | 2105 | OG0000017 | Get ORF Coding potential... Type: noncoding Potential: -1.058 Folding energies... MFEI: -27.938 AMFE: -0.651 GC content %: 42.898 | |
| Atauschii_AET4Gv20529800.18 AET4Gv20529800.18 |
Low | No | 2512 | OG0000017 | Get ORF Coding potential... Type: noncoding Potential: -1.069 Folding energies... MFEI: -27.830 AMFE: -0.655 GC content %: 42.476 | |
| Atauschii_AET4Gv20529800.19 AET4Gv20529800.19 |
Low | No | 3036 | OG0000017 | Get ORF Coding potential... Type: noncoding Potential: -1.079 Folding energies... MFEI: -27.039 AMFE: -0.658 GC content %: 41.107 | |
| Atauschii_AET4Gv20529800.2 AET4Gv20529800.2 |
Low | No | 3307 | OG0000017 | Get ORF Coding potential... Type: noncoding Potential: -0.969 Folding energies... MFEI: -26.828 AMFE: -0.658 GC content %: 40.762 | |
| Atauschii_AET4Gv20529800.20 AET4Gv20529800.20 |
Low | No | 2635 | OG0000017 | Get ORF Coding potential... Type: noncoding Potential: -1.072 Folding energies... MFEI: -27.066 AMFE: -0.648 GC content %: 41.746 | |
| Atauschii_AET4Gv20529800.21 AET4Gv20529800.21 |
High | No | 1680 | OG0000017 | Get ORF Coding potential... Type: noncoding Potential: -1.041 Folding energies... MFEI: -27.887 AMFE: -0.633 GC content %: 44.048 | |
| Atauschii_AET4Gv20529800.22 AET4Gv20529800.22 |
High | No | 1697 | OG0000017 | Get ORF Coding potential... Type: noncoding Potential: -1.042 Folding energies... MFEI: -28.857 AMFE: -0.637 GC content %: 45.315 | |
| Atauschii_AET4Gv20529800.23 AET4Gv20529800.23 |
Low | No | 2601 | OG0000017 | Get ORF Coding potential... Type: noncoding Potential: -1.018 Folding energies... MFEI: -27.278 AMFE: -0.655 GC content %: 41.676 | |
| Atauschii_AET4Gv20529800.24 AET4Gv20529800.24 |
Low | No | 1805 | OG0000017 | Get ORF Coding potential... Type: noncoding Potential: -0.672 Folding energies... MFEI: -28.493 AMFE: -0.640 GC content %: 44.488 | |
| Atauschii_AET4Gv20529800.25 AET4Gv20529800.25 |
Low | No | 3246 | OG0000017 | Get ORF Coding potential... Type: noncoding Potential: -0.957 Folding energies... MFEI: -26.802 AMFE: -0.661 GC content %: 40.542 | |
| Atauschii_AET4Gv20529800.26 AET4Gv20529800.26 |
Low | No | 2867 | OG0000017 | Get ORF Coding potential... Type: noncoding Potential: -1.076 Folding energies... MFEI: -27.119 AMFE: -0.661 GC content %: 41.018 | |
| Atauschii_AET4Gv20529800.27 AET4Gv20529800.27 |
Low | No | 3672 | OG0000017 | Get ORF Coding potential... Type: noncoding Potential: -0.973 Folding energies... MFEI: -27.032 AMFE: -0.676 GC content %: 39.978 | |
| Atauschii_AET4Gv20529800.28 AET4Gv20529800.28 |
Low | No | 3100 | OG0000017 | Get ORF Coding potential... Type: noncoding Potential: -1.080 Folding energies... MFEI: -27.045 AMFE: -0.660 GC content %: 41.000 | |
| Atauschii_AET4Gv20529800.29 AET4Gv20529800.29 |
Low | No | 3920 | OG0000017 | Get ORF Coding potential... Type: noncoding Potential: -0.975 Folding energies... MFEI: -26.804 AMFE: -0.679 GC content %: 39.464 | |
| Atauschii_AET4Gv20529800.3 AET4Gv20529800.3 |
Low | No | 3926 | OG0000017 | Get ORF Coding potential... Type: noncoding Potential: -0.972 Folding energies... MFEI: -26.470 AMFE: -0.667 GC content %: 39.659 | |
| Atauschii_AET4Gv20529800.30 AET4Gv20529800.30 |
Low | No | 2882 | OG0000017 | Get ORF Coding potential... Type: noncoding Potential: -1.077 Folding energies... MFEI: -27.176 AMFE: -0.660 GC content %: 41.152 | |
| Atauschii_AET4Gv20529800.31 AET4Gv20529800.31 |
Low | No | 2215 | OG0000017 | Get ORF Coding potential... Type: noncoding Potential: -1.001 Folding energies... MFEI: -27.223 AMFE: -0.634 GC content %: 42.935 | |
| Atauschii_AET4Gv20529800.32 AET4Gv20529800.32 |
Low | No | 2994 | OG0000017 | Get ORF Coding potential... Type: noncoding Potential: -0.949 Folding energies... MFEI: -27.218 AMFE: -0.669 GC content %: 40.681 | |
| Atauschii_AET4Gv20529800.33 AET4Gv20529800.33 |
Low | No | 2335 | OG0000017 | Get ORF Coding potential... Type: noncoding Potential: -1.065 Folding energies... MFEI: -27.829 AMFE: -0.646 GC content %: 43.084 | |
| Atauschii_AET4Gv20529800.34 AET4Gv20529800.34 |
Low | No | 2524 | OG0000017 | Get ORF Coding potential... Type: noncoding Potential: -1.069 Folding energies... MFEI: -27.294 AMFE: -0.651 GC content %: 41.918 | |
| Atauschii_AET4Gv20529800.35 AET4Gv20529800.35 |
Low | No | 2524 | OG0000017 | Get ORF Coding potential... Type: noncoding Potential: -1.069 Folding energies... MFEI: -27.342 AMFE: -0.653 GC content %: 41.878 | |
| Atauschii_AET4Gv20529800.36 AET4Gv20529800.36 |
Low | No | 3452 | OG0000017 | Get ORF Coding potential... Type: noncoding Potential: -0.970 Folding energies... MFEI: -26.889 AMFE: -0.666 GC content %: 40.353 | |
| Atauschii_AET4Gv20529800.37 AET4Gv20529800.37 |
Low | No | 3536 | OG0000017 | Get ORF Coding potential... Type: noncoding Potential: -1.043 Folding energies... MFEI: -27.036 AMFE: -0.674 GC content %: 40.130 | |
| Atauschii_AET4Gv20529800.38 AET4Gv20529800.38 |
Low | No | 2546 | OG0000017 | Get ORF Coding potential... Type: noncoding Potential: -1.070 Folding energies... MFEI: -27.133 AMFE: -0.654 GC content %: 41.477 | |
| Atauschii_AET4Gv20529800.39 AET4Gv20529800.39 |
Low | No | 3308 | OG0000017 | Get ORF Coding potential... Type: noncoding Potential: -0.455 Folding energies... MFEI: -27.449 AMFE: -0.681 GC content %: 40.326 | |
| Atauschii_AET4Gv20529800.4 AET4Gv20529800.4 |
Low | No | 2561 | OG0000017 | Get ORF Coding potential... Type: noncoding Potential: -0.933 Folding energies... MFEI: -27.481 AMFE: -0.645 GC content %: 42.601 | |
| Atauschii_AET4Gv20529800.40 AET4Gv20529800.40 |
Low | No | 3536 | OG0000017 | Get ORF Coding potential... Type: noncoding Potential: -0.964 Folding energies... MFEI: -26.974 AMFE: -0.672 GC content %: 40.158 | |
| Atauschii_AET4Gv20529800.41 AET4Gv20529800.41 |
Low | No | 2602 | OG0000017 | Get ORF Coding potential... Type: noncoding Potential: -1.071 Folding energies... MFEI: -27.229 AMFE: -0.649 GC content %: 41.929 | |
| Atauschii_AET4Gv20529800.42 AET4Gv20529800.42 |
Low | No | 2685 | OG0000017 | Get ORF Coding potential... Type: noncoding Potential: -0.938 Folding energies... MFEI: -27.646 AMFE: -0.680 GC content %: 40.670 | |
| Atauschii_AET4Gv20529800.43 AET4Gv20529800.43 |
Low | No | 2946 | OG0000017 | Get ORF Coding potential... Type: noncoding Potential: -0.948 Folding energies... MFEI: -26.840 AMFE: -0.673 GC content %: 39.885 | |
| Atauschii_AET4Gv20529800.44 AET4Gv20529800.44 |
Low | No | 3072 | OG0000017 | Get ORF Coding potential... Type: noncoding Potential: -0.952 Folding energies... MFEI: -26.849 AMFE: -0.679 GC content %: 39.551 | |
| Atauschii_AET4Gv20529800.45 AET4Gv20529800.45 |
Low | No | 3313 | OG0000017 | Get ORF Coding potential... Type: noncoding Potential: -0.959 Folding energies... MFEI: -25.804 AMFE: -0.707 GC content %: 36.523 | |
| Atauschii_AET4Gv20529800.46 AET4Gv20529800.46 |
Low | No | 2136 | OG0000017 | Get ORF Coding potential... Type: noncoding Potential: -1.233 Folding energies... MFEI: -25.342 AMFE: -0.677 GC content %: 37.406 | |
| Atauschii_AET4Gv20529800.47 AET4Gv20529800.47 |
Low | No | 3368 | OG0000017 | Get ORF Coding potential... Type: noncoding Potential: -0.960 Folding energies... MFEI: -25.018 AMFE: -0.698 GC content %: 35.837 | |
| Atauschii_AET4Gv20529800.48 AET4Gv20529800.48 |
Low | No | 2660 | OG0000017 | Get ORF Coding potential... Type: noncoding Potential: -0.959 Folding energies... MFEI: -25.323 AMFE: -0.702 GC content %: 36.090 | |
| Atauschii_AET4Gv20529800.49 AET4Gv20529800.49 |
Low | No | 2374 | OG0000017 | Get ORF Coding potential... Type: noncoding Potential: -1.232 Folding energies... MFEI: -25.303 AMFE: -0.702 GC content %: 36.057 | |
| Atauschii_AET4Gv20529800.5 AET4Gv20529800.5 |
Low | No | 2246 | OG0000017 | Get ORF Coding potential... Type: noncoding Potential: -1.062 Folding energies... MFEI: -27.569 AMFE: -0.638 GC content %: 43.232 | |
| Atauschii_AET4Gv20529800.50 AET4Gv20529800.50 |
Low | No | 2402 | OG0000017 | Get ORF Coding potential... Type: noncoding Potential: -0.953 Folding energies... MFEI: -24.996 AMFE: -0.696 GC content %: 35.928 | |
| Atauschii_AET4Gv20529800.51 AET4Gv20529800.51 |
Low | No | 1752 | OG0000017 | Get ORF Coding potential... Type: noncoding Potential: -1.200 Folding energies... MFEI: -25.411 AMFE: -0.679 GC content %: 37.443 | |
| Atauschii_AET4Gv20529800.52 AET4Gv20529800.52 |
Low | No | 2086 | OG0000017 | Get ORF Coding potential... Type: noncoding Potential: -0.995 Folding energies... MFEI: -24.674 AMFE: -0.685 GC content %: 36.002 | |
| Atauschii_AET4Gv20529800.53 AET4Gv20529800.53 |
Low | No | 2316 | OG0000017 | Get ORF Coding potential... Type: noncoding Potential: -1.230 Folding energies... MFEI: -24.775 AMFE: -0.690 GC content %: 35.881 | |
| Atauschii_AET4Gv20529800.54 AET4Gv20529800.54 |
Low | No | 2243 | OG0000017 | Get ORF Coding potential... Type: noncoding Potential: -0.949 Folding energies... MFEI: -24.414 AMFE: -0.684 GC content %: 35.667 | |
| Atauschii_AET4Gv20529800.55 AET4Gv20529800.55 |
Low | No | 1522 | OG0000017 | Get ORF Coding potential... Type: noncoding Potential: -0.958 Folding energies... MFEI: -24.744 AMFE: -0.669 GC content %: 36.991 | |
| Atauschii_AET4Gv20529800.56 AET4Gv20529800.56 |
Low | No | 2490 | OG0000017 | Get ORF Coding potential... Type: noncoding Potential: -1.004 Folding energies... MFEI: -25.357 AMFE: -0.699 GC content %: 36.265 | |
| Atauschii_AET4Gv20529800.57 AET4Gv20529800.57 |
Low | No | 1196 | OG0000017 | Get ORF Coding potential... Type: noncoding Potential: -0.955 Folding energies... MFEI: -23.161 AMFE: -0.650 GC content %: 35.619 | |
| Atauschii_AET4Gv20529800.58 AET4Gv20529800.58 |
Low | No | 1908 | OG0000017 | Get ORF Coding potential... Type: noncoding Potential: -0.977 Folding energies... MFEI: -24.392 AMFE: -0.670 GC content %: 36.426 | |
| Atauschii_AET4Gv20529800.59 AET4Gv20529800.59 |
Low | No | 1566 | OG0000017 | Get ORF Coding potential... Type: noncoding Potential: -1.209 Folding energies... MFEI: -24.208 AMFE: -0.662 GC content %: 36.590 | |
| Atauschii_AET4Gv20529800.6 AET4Gv20529800.6 |
Low | No | 2985 | OG0000017 | Get ORF Coding potential... Type: noncoding Potential: -0.949 Folding energies... MFEI: -27.343 AMFE: -0.661 GC content %: 41.340 | |
| Atauschii_AET4Gv20529800.60 AET4Gv20529800.60 |
Low | No | 1714 | OG0000017 | Get ORF Coding potential... Type: noncoding Potential: -1.071 Folding energies... MFEI: -25.642 AMFE: -0.687 GC content %: 37.340 | |
| Atauschii_AET4Gv20529800.61 AET4Gv20529800.61 |
Low | No | 1591 | OG0000017 | Get ORF Coding potential... Type: noncoding Potential: -1.122 Folding energies... MFEI: -25.732 AMFE: -0.694 GC content %: 37.084 | |
| Atauschii_AET4Gv20529800.62 AET4Gv20529800.62 |
Low | No | 1271 | OG0000017 | Get ORF Coding potential... Type: noncoding Potential: -1.062 Folding energies... MFEI: -25.515 AMFE: -0.693 GC content %: 36.821 | |
| Atauschii_AET4Gv20529800.7 AET4Gv20529800.7 |
Low | No | 2564 | OG0000017 | Get ORF Coding potential... Type: noncoding Potential: -1.016 Folding energies... MFEI: -27.258 AMFE: -0.645 GC content %: 42.278 | |
| Atauschii_AET4Gv20529800.9 AET4Gv20529800.9 |
High | No | 1942 | OG0000017 | Get ORF Coding potential... Type: noncoding Potential: -1.052 Folding energies... MFEI: -27.286 AMFE: -0.626 GC content %: 43.615 |
Matches to external databases
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET4Gv20529800.40 | SwissProt | 2021-04-01 | Q7F0R1 | 6.86e-6 |
| Atauschii_AET4Gv20529800.13 | RepBase (RepeatMasker) | 2014-01-31 | DNA/hAT-Blackjack | |
| Atauschii_AET4Gv20529800.31 | RepBase (RepeatMasker) | 2014-01-31 | DNA/hAT-Blackjack | |
| Atauschii_AET4Gv20529800.46 | RepBase (RepeatMasker) | 2014-01-31 | DNA/hAT-Blackjack | |
| Atauschii_AET4Gv20529800.60 | RepBase (RepeatMasker) | 2014-01-31 | DNA/hAT-Blackjack | |
| Atauschii_AET4Gv20529800.19 | SwissProt | 2021-04-01 | Q7F0R1 | 5.1e-4 |
| Atauschii_AET4Gv20529800.32 | SwissProt | 2021-04-01 | Q7F0R1 | 2.95e-6 |
| Atauschii_AET4Gv20529800.6 | SwissProt | 2021-04-01 | Q7F0R1 | 5.57e-6 |
| Atauschii_AET4Gv20529800.27 | RepBase (RepeatMasker) | 2014-01-31 | DNA/hAT-Blackjack; LTR/Copia | |
| Atauschii_AET4Gv20529800.41 | RepBase (RepeatMasker) | 2014-01-31 | DNA/hAT-Blackjack |
... further results
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
