Atauschii AET4Gv20537000
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET4Gv20537000 [ AET4Gv20537000] |
4D | 371813332 | 371816969 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET4Gv20537000.1 AET4Gv20537000.1 |
High | No | 2159 | OG0001577 | Get ORF Coding potential... Type: noncoding Potential: -0.932 Folding energies... MFEI: -34.590 AMFE: -0.673 GC content %: 51.413 | |
| Atauschii_AET4Gv20537000.10 AET4Gv20537000.10 |
High | No | 1833 | OG0001577 | Get ORF Coding potential... Type: noncoding Potential: -1.223 Folding energies... MFEI: -32.990 AMFE: -0.687 GC content %: 48.009 | |
| Atauschii_AET4Gv20537000.14 AET4Gv20537000.14 |
High | No | 693 | OG0001577 | Get ORF Coding potential... Type: noncoding Potential: -1.205 Folding energies... MFEI: -30.159 AMFE: -0.643 GC content %: 46.898 | |
| Atauschii_AET4Gv20537000.2 AET4Gv20537000.2 |
High | No | 2168 | OG0001577 | Get ORF Coding potential... Type: noncoding Potential: -0.932 Folding energies... MFEI: -34.677 AMFE: -0.683 GC content %: 50.784 | |
| Atauschii_AET4Gv20537000.3 AET4Gv20537000.3 |
High | No | 1874 | OG0001577 | Get ORF Coding potential... Type: noncoding Potential: -0.919 Folding energies... MFEI: -35.624 AMFE: -0.670 GC content %: 53.148 | |
| Atauschii_AET4Gv20537000.4 AET4Gv20537000.4 |
High | No | 2091 | OG0001577 | Get ORF Coding potential... Type: noncoding Potential: -0.912 Folding energies... MFEI: -35.332 AMFE: -0.678 GC content %: 52.128 | |
| Atauschii_AET4Gv20537000.5 AET4Gv20537000.5 |
High | No | 2271 | OG0001577 | Get ORF Coding potential... Type: noncoding Potential: -0.920 Folding energies... MFEI: -34.505 AMFE: -0.690 GC content %: 50.022 | |
| Atauschii_AET4Gv20537000.6 AET4Gv20537000.6 |
High | No | 1976 | OG0001577 | Get ORF Coding potential... Type: noncoding Potential: -0.924 Folding energies... MFEI: -35.273 AMFE: -0.670 GC content %: 52.682 | |
| Atauschii_AET4Gv20537000.7 AET4Gv20537000.7 |
High | No | 1980 | OG0001577 | Get ORF Coding potential... Type: noncoding Potential: -0.924 Folding energies... MFEI: -35.222 AMFE: -0.669 GC content %: 52.677 | |
| Atauschii_AET4Gv20537000.8 AET4Gv20537000.8 |
High | No | 2224 | OG0001577 | Get ORF Coding potential... Type: noncoding Potential: -0.934 Folding energies... MFEI: -34.501 AMFE: -0.690 GC content %: 50.000 | |
| Atauschii_AET4Gv20537000.9 AET4Gv20537000.9 |
High | No | 2157 | OG0001577 | Get ORF Coding potential... Type: noncoding Potential: -0.915 Folding energies... MFEI: -34.965 AMFE: -0.683 GC content %: 51.229 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
