Atauschii AET4Gv20551900
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET4Gv20551900 [ AET4Gv20551900] |
4D | 381181216 | 381189708 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET4Gv20551900.11 AET4Gv20551900.11 |
Low | No | 1195 | OG0075078 | Get ORF Coding potential... Type: noncoding Potential: -0.131 Folding energies... MFEI: -34.862 AMFE: -0.611 GC content %: 57.071 | |
| Atauschii_AET4Gv20551900.23 AET4Gv20551900.23 |
Low | No | 2263 | OG0000029 | Get ORF Coding potential... Type: noncoding Potential: -1.144 Folding energies... MFEI: -24.901 AMFE: -0.654 GC content %: 38.091 | |
| Atauschii_AET4Gv20551900.24 AET4Gv20551900.24 |
High | No | 2091 | OG0000076 | Get ORF Coding potential... Type: noncoding Potential: -1.110 Folding energies... MFEI: -24.974 AMFE: -0.646 GC content %: 38.642 | |
| Atauschii_AET4Gv20551900.25 AET4Gv20551900.25 |
High | No | 1883 | OG0000029 | Get ORF Coding potential... Type: noncoding Potential: -1.134 Folding energies... MFEI: -26.198 AMFE: -0.647 GC content %: 40.520 | |
| Atauschii_AET4Gv20551900.26 AET4Gv20551900.26 |
High | No | 2732 | OG0000029 | Get ORF Coding potential... Type: noncoding Potential: -1.194 Folding energies... MFEI: -27.661 AMFE: -0.672 GC content %: 41.142 | |
| Atauschii_AET4Gv20551900.27 AET4Gv20551900.27 |
High | No | 2340 | OG0000076 | Get ORF Coding potential... Type: noncoding Potential: -1.184 Folding energies... MFEI: -28.684 AMFE: -0.682 GC content %: 42.051 | |
| Atauschii_AET4Gv20551900.29 AET4Gv20551900.29 |
High | No | 2337 | OG0000076 | Get ORF Coding potential... Type: noncoding Potential: -1.183 Folding energies... MFEI: -28.348 AMFE: -0.670 GC content %: 42.319 | |
| Atauschii_AET4Gv20551900.30 AET4Gv20551900.30 |
High | No | 2381 | OG0000076 | Get ORF Coding potential... Type: noncoding Potential: -1.177 Folding energies... MFEI: -28.761 AMFE: -0.681 GC content %: 42.251 | |
| Atauschii_AET4Gv20551900.31 AET4Gv20551900.31 |
High | No | 1947 | OG0000076 | Get ORF Coding potential... Type: noncoding Potential: -1.169 Folding energies... MFEI: -28.778 AMFE: -0.677 GC content %: 42.527 | |
| Atauschii_AET4Gv20551900.32 AET4Gv20551900.32 |
High | No | 1564 | OG0000076 | Get ORF Coding potential... Type: noncoding Potential: -1.147 Folding energies... MFEI: -30.269 AMFE: -0.686 GC content %: 44.118 | |
| Atauschii_AET4Gv20551900.33 AET4Gv20551900.33 |
High | No | 1697 | OG0000076 | Get ORF Coding potential... Type: noncoding Potential: -1.156 Folding energies... MFEI: -30.177 AMFE: -0.682 GC content %: 44.255 | |
| Atauschii_AET4Gv20551900.34 AET4Gv20551900.34 |
High | No | 1574 | OG0000076 | Get ORF Coding potential... Type: noncoding Potential: -1.121 Folding energies... MFEI: -29.994 AMFE: -0.674 GC content %: 44.473 | |
| Atauschii_AET4Gv20551900.35 AET4Gv20551900.35 |
High | No | 3254 | OG0000076 | Get ORF Coding potential... Type: noncoding Potential: -1.208 Folding energies... MFEI: -26.879 AMFE: -0.677 GC content %: 39.674 | |
| Atauschii_AET4Gv20551900.36 AET4Gv20551900.36 |
High | No | 2576 | OG0000076 | Get ORF Coding potential... Type: noncoding Potential: -1.186 Folding energies... MFEI: -28.049 AMFE: -0.683 GC content %: 41.071 | |
| Atauschii_AET4Gv20551900.37 AET4Gv20551900.37 |
High | No | 1391 | OG0000076 | Get ORF Coding potential... Type: noncoding Potential: -1.134 Folding energies... MFEI: -30.633 AMFE: -0.682 GC content %: 44.932 | |
| Atauschii_AET4Gv20551900.38 AET4Gv20551900.38 |
High | No | 1401 | OG0000076 | Get ORF Coding potential... Type: noncoding Potential: -1.134 Folding energies... MFEI: -30.378 AMFE: -0.676 GC content %: 44.968 | |
| Atauschii_AET4Gv20551900.39 AET4Gv20551900.39 |
High | No | 1727 | OG0000029 | Get ORF Coding potential... Type: noncoding Potential: -1.129 Folding energies... MFEI: -26.109 AMFE: -0.637 GC content %: 40.996 | |
| Atauschii_AET4Gv20551900.40 AET4Gv20551900.40 |
High | No | 1614 | OG0000076 | Get ORF Coding potential... Type: noncoding Potential: -1.125 Folding energies... MFEI: -30.136 AMFE: -0.683 GC content %: 44.114 | |
| Atauschii_AET4Gv20551900.41 AET4Gv20551900.41 |
High | No | 830 | OG0000076 | Get ORF Coding potential... Type: noncoding Potential: -1.050 Folding energies... MFEI: -27.072 AMFE: -0.607 GC content %: 44.578 | |
| Atauschii_AET4Gv20551900.42 AET4Gv20551900.42 |
High | No | 1425 | OG0000029 | Get ORF Coding potential... Type: noncoding Potential: -1.115 Folding energies... MFEI: -25.361 AMFE: -0.623 GC content %: 40.702 | |
| Atauschii_AET4Gv20551900.43 AET4Gv20551900.43 |
High | No | 1221 | OG0000076 | Get ORF Coding potential... Type: noncoding Potential: -1.117 Folding energies... MFEI: -31.540 AMFE: -0.665 GC content %: 47.420 | |
| Atauschii_AET4Gv20551900.44 AET4Gv20551900.44 |
High | No | 2183 | OG0000076 | Get ORF Coding potential... Type: noncoding Potential: -1.178 Folding energies... MFEI: -28.740 AMFE: -0.671 GC content %: 42.831 | |
| Atauschii_AET4Gv20551900.45 AET4Gv20551900.45 |
High | No | 1102 | OG0000076 | Get ORF Coding potential... Type: noncoding Potential: -1.119 Folding energies... MFEI: -24.265 AMFE: -0.628 GC content %: 38.657 | |
| Atauschii_AET4Gv20551900.46 AET4Gv20551900.46 |
High | No | 2086 | OG0000076 | Get ORF Coding potential... Type: noncoding Potential: -1.174 Folding energies... MFEI: -29.104 AMFE: -0.679 GC content %: 42.857 | |
| Atauschii_AET4Gv20551900.47 AET4Gv20551900.47 |
High | No | 820 | OG0000076 | Get ORF Coding potential... Type: noncoding Potential: -1.065 Folding energies... MFEI: -28.171 AMFE: -0.608 GC content %: 46.341 | |
| Atauschii_AET4Gv20551900.48 AET4Gv20551900.48 |
High | No | 622 | OG0000076 | Get ORF Coding potential... Type: noncoding Potential: -1.032 Folding energies... MFEI: -25.740 AMFE: -0.589 GC content %: 43.730 | |
| Atauschii_AET4Gv20551900.49 AET4Gv20551900.49 |
High | No | 1065 | OG0000076 | Get ORF Coding potential... Type: noncoding Potential: -1.074 Folding energies... MFEI: -23.972 AMFE: -0.615 GC content %: 38.967 | |
| Atauschii_AET4Gv20551900.50 AET4Gv20551900.50 |
High | No | 2180 | OG0000076 | Get ORF Coding potential... Type: noncoding Potential: -1.178 Folding energies... MFEI: -28.982 AMFE: -0.682 GC content %: 42.477 | |
| Atauschii_AET4Gv20551900.51 AET4Gv20551900.51 |
High | No | 808 | OG0000076 | Get ORF Coding potential... Type: noncoding Potential: -1.063 Folding energies... MFEI: -28.193 AMFE: -0.606 GC content %: 46.535 | |
| Atauschii_AET4Gv20551900.52 AET4Gv20551900.52 |
High | No | 1182 | OG0000076 | Get ORF Coding potential... Type: noncoding Potential: -1.037 Folding energies... MFEI: -25.643 AMFE: -0.620 GC content %: 41.371 | |
| Atauschii_AET4Gv20551900.53 AET4Gv20551900.53 |
High | No | 1977 | OG0000076 | Get ORF Coding potential... Type: noncoding Potential: -1.154 Folding energies... MFEI: -28.771 AMFE: -0.679 GC content %: 42.387 | |
| Atauschii_AET4Gv20551900.54 AET4Gv20551900.54 |
High | No | 1895 | OG0000076 | Get ORF Coding potential... Type: noncoding Potential: -1.166 Folding energies... MFEI: -28.755 AMFE: -0.684 GC content %: 42.058 | |
| Atauschii_AET4Gv20551900.55 AET4Gv20551900.55 |
High | No | 2241 | OG0000076 | Get ORF Coding potential... Type: noncoding Potential: -1.180 Folding energies... MFEI: -28.751 AMFE: -0.683 GC content %: 42.124 | |
| Atauschii_AET4Gv20551900.56 AET4Gv20551900.56 |
High | No | 2884 | OG0000076 | Get ORF Coding potential... Type: noncoding Potential: -1.197 Folding energies... MFEI: -27.080 AMFE: -0.672 GC content %: 40.291 | |
| Atauschii_AET4Gv20551900.57 AET4Gv20551900.57 |
High | No | 774 | OG0000076 | Get ORF Coding potential... Type: noncoding Potential: -1.058 Folding energies... MFEI: -27.739 AMFE: -0.601 GC content %: 46.124 | |
| Atauschii_AET4Gv20551900.58 AET4Gv20551900.58 |
High | No | 2402 | OG0000029 | Get ORF Coding potential... Type: noncoding Potential: -1.186 Folding energies... MFEI: -27.348 AMFE: -0.664 GC content %: 41.216 | |
| Atauschii_AET4Gv20551900.59 AET4Gv20551900.59 |
High | No | 1914 | OG0000076 | Get ORF Coding potential... Type: noncoding Potential: -1.167 Folding energies... MFEI: -28.166 AMFE: -0.663 GC content %: 42.476 | |
| Atauschii_AET4Gv20551900.60 AET4Gv20551900.60 |
High | No | 1688 | OG0000076 | Get ORF Coding potential... Type: noncoding Potential: -1.160 Folding energies... MFEI: -28.791 AMFE: -0.666 GC content %: 43.246 | |
| Atauschii_AET4Gv20551900.61 AET4Gv20551900.61 |
High | No | 2234 | OG0000076 | Get ORF Coding potential... Type: noncoding Potential: -1.180 Folding energies... MFEI: -28.850 AMFE: -0.684 GC content %: 42.167 | |
| Atauschii_AET4Gv20551900.62 AET4Gv20551900.62 |
High | No | 2750 | OG0000076 | Get ORF Coding potential... Type: noncoding Potential: -1.195 Folding energies... MFEI: -27.098 AMFE: -0.673 GC content %: 40.255 | |
| Atauschii_AET4Gv20551900.63 AET4Gv20551900.63 |
High | No | 2017 | OG0000076 | Get ORF Coding potential... Type: noncoding Potential: -1.196 Folding energies... MFEI: -29.207 AMFE: -0.679 GC content %: 42.985 | |
| Atauschii_AET4Gv20551900.64 AET4Gv20551900.64 |
High | No | 2217 | OG0000076 | Get ORF Coding potential... Type: noncoding Potential: -1.169 Folding energies... MFEI: -28.656 AMFE: -0.679 GC content %: 42.174 | |
| Atauschii_AET4Gv20551900.65 AET4Gv20551900.65 |
High | No | 2210 | OG0000076 | Get ORF Coding potential... Type: noncoding Potential: -1.179 Folding energies... MFEI: -28.977 AMFE: -0.686 GC content %: 42.262 | |
| Atauschii_AET4Gv20551900.66 AET4Gv20551900.66 |
High | No | 792 | OG0000076 | Get ORF Coding potential... Type: noncoding Potential: -1.061 Folding energies... MFEI: -28.801 AMFE: -0.615 GC content %: 46.843 | |
| Atauschii_AET4Gv20551900.67 AET4Gv20551900.67 |
High | No | 2204 | OG0000076 | Get ORF Coding potential... Type: noncoding Potential: -1.179 Folding energies... MFEI: -29.002 AMFE: -0.687 GC content %: 42.241 | |
| Atauschii_AET4Gv20551900.68 AET4Gv20551900.68 |
High | No | 2213 | OG0000076 | Get ORF Coding potential... Type: noncoding Potential: -1.168 Folding energies... MFEI: -28.807 AMFE: -0.683 GC content %: 42.205 | |
| Atauschii_AET4Gv20551900.69 AET4Gv20551900.69 |
High | No | 1703 | OG0000029 | Get ORF Coding potential... Type: noncoding Potential: -0.940 Folding energies... MFEI: -24.193 AMFE: -0.640 GC content %: 37.816 | |
| Atauschii_AET4Gv20551900.70 AET4Gv20551900.70 |
High | No | 1583 | OG0000076 | Get ORF Coding potential... Type: noncoding Potential: -1.080 Folding energies... MFEI: -24.100 AMFE: -0.655 GC content %: 36.766 |
Matches to external databases
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET4Gv20551900.11 | SwissProt | 2021-04-01 | Q9XG81 | 3.04e-17 |
| Atauschii_AET4Gv20551900.23 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
