Atauschii AET4Gv20555200
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET4Gv20555200 [ AET4Gv20555200] |
4D | 382671044 | 382673285 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET4Gv20555200.1 AET4Gv20555200.1 |
Low | No | 1557 | OG0000499 | Get ORF Coding potential... Type: noncoding Potential: -0.270 Folding energies... MFEI: -28.658 AMFE: -0.649 GC content %: 44.123 | |
| Atauschii_AET4Gv20555200.10 AET4Gv20555200.10 |
Low | No | 1882 | OG0000499 | Get ORF Coding potential... Type: noncoding Potential: -1.284 Folding energies... MFEI: -27.906 AMFE: -0.645 GC content %: 43.252 | |
| Atauschii_AET4Gv20555200.11 AET4Gv20555200.11 |
Low | No | 1573 | OG0000499 | Get ORF Coding potential... Type: noncoding Potential: -0.243 Folding energies... MFEI: -28.067 AMFE: -0.639 GC content %: 43.929 | |
| Atauschii_AET4Gv20555200.12 AET4Gv20555200.12 |
Low | No | 1829 | OG0000499 | Get ORF Coding potential... Type: noncoding Potential: -1.288 Folding energies... MFEI: -27.775 AMFE: -0.639 GC content %: 43.466 | |
| Atauschii_AET4Gv20555200.13 AET4Gv20555200.13 |
Low | No | 1980 | OG0000499 | Get ORF Coding potential... Type: noncoding Potential: -1.286 Folding energies... MFEI: -27.949 AMFE: -0.654 GC content %: 42.727 | |
| Atauschii_AET4Gv20555200.14 AET4Gv20555200.14 |
Low | No | 1853 | OG0000499 | Get ORF Coding potential... Type: noncoding Potential: -1.283 Folding energies... MFEI: -28.597 AMFE: -0.653 GC content %: 43.767 | |
| Atauschii_AET4Gv20555200.15 AET4Gv20555200.15 |
Low | No | 1909 | OG0000499 | Get ORF Coding potential... Type: noncoding Potential: -1.167 Folding energies... MFEI: -27.988 AMFE: -0.643 GC content %: 43.531 | |
| Atauschii_AET4Gv20555200.16 AET4Gv20555200.16 |
Low | No | 1740 | OG0000499 | Get ORF Coding potential... Type: noncoding Potential: -1.281 Folding energies... MFEI: -28.506 AMFE: -0.643 GC content %: 44.310 | |
| Atauschii_AET4Gv20555200.17 AET4Gv20555200.17 |
Low | No | 1608 | OG0000499 | Get ORF Coding potential... Type: noncoding Potential: -0.243 Folding energies... MFEI: -28.215 AMFE: -0.645 GC content %: 43.719 | |
| Atauschii_AET4Gv20555200.18 AET4Gv20555200.18 |
Low | No | 1134 | OG0000499 | Get ORF Coding potential... Type: noncoding Potential: -0.219 Folding energies... MFEI: -28.316 AMFE: -0.625 GC content %: 45.326 | |
| Atauschii_AET4Gv20555200.19 AET4Gv20555200.19 |
Low | No | 1662 | OG0000499 | Get ORF Coding potential... Type: noncoding Potential: -1.283 Folding energies... MFEI: -28.219 AMFE: -0.632 GC content %: 44.645 | |
| Atauschii_AET4Gv20555200.2 AET4Gv20555200.2 |
Low | No | 1369 | OG0000499 | Get ORF Coding potential... Type: noncoding Potential: -0.251 Folding energies... MFEI: -29.328 AMFE: -0.637 GC content %: 46.019 | |
| Atauschii_AET4Gv20555200.20 AET4Gv20555200.20 |
Low | No | 1551 | OG0000499 | Get ORF Coding potential... Type: noncoding Potential: -0.294 Folding energies... MFEI: -27.866 AMFE: -0.635 GC content %: 43.907 | |
| Atauschii_AET4Gv20555200.3 AET4Gv20555200.3 |
Low | No | 1520 | OG0000499 | Get ORF Coding potential... Type: noncoding Potential: -0.242 Folding energies... MFEI: -29.105 AMFE: -0.650 GC content %: 44.803 | |
| Atauschii_AET4Gv20555200.4 AET4Gv20555200.4 |
Low | No | 1387 | OG0000499 | Get ORF Coding potential... Type: noncoding Potential: -0.271 Folding energies... MFEI: -29.322 AMFE: -0.637 GC content %: 45.999 | |
| Atauschii_AET4Gv20555200.5 AET4Gv20555200.5 |
Low | No | 2126 | OG0000499 | Get ORF Coding potential... Type: noncoding Potential: -1.176 Folding energies... MFEI: -27.234 AMFE: -0.644 GC content %: 42.286 | |
| Atauschii_AET4Gv20555200.6 AET4Gv20555200.6 |
Low | No | 1417 | OG0000499 | Get ORF Coding potential... Type: noncoding Potential: -0.251 Folding energies... MFEI: -29.047 AMFE: -0.635 GC content %: 45.730 | |
| Atauschii_AET4Gv20555200.7 AET4Gv20555200.7 |
Low | No | 1533 | OG0000499 | Get ORF Coding potential... Type: noncoding Potential: -0.259 Folding energies... MFEI: -28.917 AMFE: -0.644 GC content %: 44.879 | |
| Atauschii_AET4Gv20555200.8 AET4Gv20555200.8 |
Low | No | 1587 | OG0000499 | Get ORF Coding potential... Type: noncoding Potential: -0.286 Folding energies... MFEI: -27.555 AMFE: -0.641 GC content %: 42.974 | |
| Atauschii_AET4Gv20555200.9 AET4Gv20555200.9 |
Low | No | 2136 | OG0000499 | Get ORF Coding potential... Type: noncoding Potential: -1.176 Folding energies... MFEI: -27.430 AMFE: -0.654 GC content %: 41.948 |
Matches to external databases
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET4Gv20555200.13 | SwissProt | 2021-04-01 | P85200 | 7.01e-4 |
| Atauschii_AET4Gv20555200.5 | SwissProt | 2021-04-01 | P85200 | 2.68e-6 |
| Atauschii_AET4Gv20555200.19 | SwissProt | 2021-04-01 | P85200 | 2.02e-6 |
| Atauschii_AET4Gv20555200.14 | SwissProt | 2021-04-01 | P85200 | 6.41e-4 |
| Atauschii_AET4Gv20555200.1 | SwissProt | 2021-04-01 | P85200 | 6.7e-15 |
| Atauschii_AET4Gv20555200.6 | SwissProt | 2021-04-01 | P85200 | 5.4e-15 |
| Atauschii_AET4Gv20555200.2 | SwissProt | 2021-04-01 | P85200 | 6.37e-15 |
| Atauschii_AET4Gv20555200.15 | SwissProt | 2021-04-01 | P85200 | 2.37e-6 |
| Atauschii_AET4Gv20555200.10 | SwissProt | 2021-04-01 | P85200 | 2.33e-6 |
| Atauschii_AET4Gv20555200.7 | SwissProt | 2021-04-01 | P85200 | 4.37e-14 |
... further results
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
