GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET4Gv20581800 [ AET4Gv20581800]	4D	399563662	399567264	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET4Gv20581800.10 AET4Gv20581800.10	Low	No	757	OG0025377		Get ORF Coding potential... Type: noncoding Potential: -0.914 Folding energies... MFEI: -30.911 AMFE: -0.602 GC content %: 51.387
Atauschii_AET4Gv20581800.2 AET4Gv20581800.2	High	No	321	OG0075146		Get ORF Coding potential... Type: noncoding Potential: -0.728 Folding energies... MFEI: -41.153 AMFE: -0.617 GC content %: 66.667
Atauschii_AET4Gv20581800.9 AET4Gv20581800.9	High	No	374	OG0075147		Get ORF Coding potential... Type: noncoding Potential: -1.446 Folding energies... MFEI: -26.150 AMFE: -0.520 GC content %: 50.267

Matches to external databases

The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias	Database	Version	Hit	Evalue
Atauschii_AET4Gv20581800.10	SwissProt	2021-04-01	Q9SIS4	4.74e-5

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).