Atauschii AET4Gv20599900
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET4Gv20599900 [ AET4Gv20599900] |
4D | 410623287 | 410644149 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET4Gv20599900.12 AET4Gv20599900.12 |
High | No | 428 | OG0010011 | Get ORF Coding potential... Type: noncoding Potential: -0.471 Folding energies... MFEI: -27.570 AMFE: -0.634 GC content %: 43.458 | |
| Atauschii_AET4Gv20599900.15 AET4Gv20599900.15 |
Low | No | 422 | OG0010011 | Get ORF Coding potential... Type: noncoding Potential: -0.486 Folding energies... MFEI: -30.000 AMFE: -0.646 GC content %: 46.445 | |
| Atauschii_AET4Gv20599900.16 AET4Gv20599900.16 |
Low | No | 227 | OG0025386 | Get ORF Coding potential... Type: noncoding Potential: -0.737 Folding energies... MFEI: -21.410 AMFE: -0.523 GC content %: 40.969 | |
| Atauschii_AET4Gv20599900.17 AET4Gv20599900.17 |
Low | No | 388 | OG0075193 | Get ORF Coding potential... Type: noncoding Potential: -1.221 Folding energies... MFEI: -24.149 AMFE: -0.608 GC content %: 39.691 | |
| Atauschii_AET4Gv20599900.21 AET4Gv20599900.21 |
Low | No | 1431 | OG0075194 | Get ORF Coding potential... Type: noncoding Potential: -1.076 Folding energies... MFEI: -27.652 AMFE: -0.722 GC content %: 38.295 | |
| Atauschii_AET4Gv20599900.28 AET4Gv20599900.28 |
High | No | 3236 | OG0016385 | Get ORF Coding potential... Type: noncoding Potential: -1.034 Folding energies... MFEI: -25.664 AMFE: -0.675 GC content %: 38.010 | |
| Atauschii_AET4Gv20599900.31 AET4Gv20599900.31 |
High | No | 720 | OG0016385 | Get ORF Coding potential... Type: noncoding Potential: -1.123 Folding energies... MFEI: -28.653 AMFE: -0.672 GC content %: 42.639 | |
| Atauschii_AET4Gv20599900.36 AET4Gv20599900.36 |
High | No | 617 | OG0016385 | Get ORF Coding potential... Type: noncoding Potential: -0.837 Folding energies... MFEI: -25.818 AMFE: -0.608 GC content %: 42.464 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET4Gv20599900.17 | RepBase (RepeatMasker) | 2014-01-31 | DNA/PIF-Harbinger | |
| Atauschii_AET4Gv20599900.21 | RepBase (RepeatMasker) | 2014-01-31 | DNA/TcMar-Stowaway | |
| Atauschii_AET4Gv20599900.16 | SwissProt | 2021-04-01 | A0JM23 | 1.37e-4 |
| Atauschii_AET4Gv20599900.15 | RepBase (RepeatMasker) | 2014-01-31 | DNA/hAT-Tag1 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
