Atauschii AET4Gv20638800
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET4Gv20638800 [ AET4Gv20638800] |
4D | 432733942 | 432736591 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET4Gv20638800.1 AET4Gv20638800.1 |
Low | No | 937 | OG0010012 | Get ORF Coding potential... Type: noncoding Potential: -0.966 Folding energies... MFEI: -31.046 AMFE: -0.646 GC content %: 48.026 | |
| Atauschii_AET4Gv20638800.10 AET4Gv20638800.10 |
High | No | 416 | OG0006956 | Get ORF Coding potential... Type: noncoding Potential: -1.048 Folding energies... MFEI: -24.351 AMFE: -0.586 GC content %: 41.587 | |
| Atauschii_AET4Gv20638800.2 AET4Gv20638800.2 |
Low | No | 752 | OG0010012 | Get ORF Coding potential... Type: noncoding Potential: -0.727 Folding energies... MFEI: -31.875 AMFE: -0.634 GC content %: 50.266 | |
| Atauschii_AET4Gv20638800.3 AET4Gv20638800.3 |
Low | No | 872 | OG0010012 | Get ORF Coding potential... Type: noncoding Potential: -0.630 Folding energies... MFEI: -32.053 AMFE: -0.645 GC content %: 49.656 | |
| Atauschii_AET4Gv20638800.4 AET4Gv20638800.4 |
Low | No | 845 | OG0006956 | Get ORF Coding potential... Type: noncoding Potential: -0.623 Folding energies... MFEI: -31.775 AMFE: -0.647 GC content %: 49.112 | |
| Atauschii_AET4Gv20638800.5 AET4Gv20638800.5 |
Low | No | 572 | OG0006956 | Get ORF Coding potential... Type: noncoding Potential: -0.722 Folding energies... MFEI: -26.171 AMFE: -0.624 GC content %: 41.958 | |
| Atauschii_AET4Gv20638800.6 AET4Gv20638800.6 |
High | No | 239 | OG0000778 | Get ORF Coding potential... Type: noncoding Potential: -0.538 Folding energies... MFEI: -20.921 AMFE: -0.505 GC content %: 41.423 | |
| Atauschii_AET4Gv20638800.8 AET4Gv20638800.8 |
High | No | 225 | OG0010013 | Get ORF Coding potential... Type: noncoding Potential: -0.706 Folding energies... MFEI: -20.711 AMFE: -0.518 GC content %: 40.000 | |
| Atauschii_AET4Gv20638800.9 AET4Gv20638800.9 |
Low | No | 471 | OG0006956 | Get ORF Coding potential... Type: noncoding Potential: -0.771 Folding energies... MFEI: -26.285 AMFE: -0.613 GC content %: 42.887 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET4Gv20638800.2 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
| Atauschii_AET4Gv20638800.3 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
| Atauschii_AET4Gv20638800.4 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
| Atauschii_AET4Gv20638800.5 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
| Atauschii_AET4Gv20638800.9 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
| Atauschii_AET4Gv20638800.1 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
