GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET4Gv20666900 [ AET4Gv20666900]	4D	447659482	447793376	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET4Gv20666900.2 AET4Gv20666900.2	High	No	775	OG0016391		Get ORF Coding potential... Type: noncoding Potential: -0.797 Folding energies... MFEI: -23.626 AMFE: -0.596 GC content %: 39.613
Atauschii_AET4Gv20666900.4 AET4Gv20666900.4	High	No	782	OG0016391		Get ORF Coding potential... Type: noncoding Potential: -0.940 Folding energies... MFEI: -24.463 AMFE: -0.569 GC content %: 42.967
Atauschii_AET4Gv20666900.5 AET4Gv20666900.5	High	No	474	OG0016391		Get ORF Coding potential... Type: noncoding Potential: -0.971 Folding energies... MFEI: -23.755 AMFE: -0.577 GC content %: 41.139

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).