Atauschii AET4Gv20684400
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET4Gv20684400 [ AET4Gv20684400] |
4D | 456976206 | 456979564 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET4Gv20684400.1 AET4Gv20684400.1 |
High | No | 3309 | OG0000500 | Get ORF Coding potential... Type: noncoding Potential: -1.051 Folding energies... MFEI: -28.713 AMFE: -0.663 GC content %: 43.306 | |
| Atauschii_AET4Gv20684400.10 AET4Gv20684400.10 |
High | No | 1669 | OG0000500 | Get ORF Coding potential... Type: noncoding Potential: -1.040 Folding energies... MFEI: -29.515 AMFE: -0.617 GC content %: 47.813 | |
| Atauschii_AET4Gv20684400.11 AET4Gv20684400.11 |
High | No | 2176 | OG0000500 | Get ORF Coding potential... Type: noncoding Potential: -1.011 Folding energies... MFEI: -28.994 AMFE: -0.630 GC content %: 46.048 | |
| Atauschii_AET4Gv20684400.12 AET4Gv20684400.12 |
High | No | 2313 | OG0000500 | Get ORF Coding potential... Type: noncoding Potential: -1.076 Folding energies... MFEI: -28.742 AMFE: -0.640 GC content %: 44.877 | |
| Atauschii_AET4Gv20684400.13 AET4Gv20684400.13 |
High | No | 2516 | OG0000500 | Get ORF Coding potential... Type: noncoding Potential: -1.027 Folding energies... MFEI: -28.088 AMFE: -0.636 GC content %: 44.197 | |
| Atauschii_AET4Gv20684400.14 AET4Gv20684400.14 |
High | No | 1306 | OG0000500 | Get ORF Coding potential... Type: noncoding Potential: -1.005 Folding energies... MFEI: -31.524 AMFE: -0.608 GC content %: 51.838 | |
| Atauschii_AET4Gv20684400.15 AET4Gv20684400.15 |
High | No | 1886 | OG0000500 | Get ORF Coding potential... Type: noncoding Potential: -1.278 Folding energies... MFEI: -26.045 AMFE: -0.643 GC content %: 40.509 | |
| Atauschii_AET4Gv20684400.16 AET4Gv20684400.16 |
High | No | 1823 | OG0000500 | Get ORF Coding potential... Type: noncoding Potential: -1.274 Folding energies... MFEI: -26.495 AMFE: -0.663 GC content %: 39.989 | |
| Atauschii_AET4Gv20684400.17 AET4Gv20684400.17 |
High | No | 840 | OG0000500 | Get ORF Coding potential... Type: noncoding Potential: -1.152 Folding energies... MFEI: -28.917 AMFE: -0.651 GC content %: 44.405 | |
| Atauschii_AET4Gv20684400.2 AET4Gv20684400.2 |
High | No | 2627 | OG0000500 | Get ORF Coding potential... Type: noncoding Potential: -1.031 Folding energies... MFEI: -27.804 AMFE: -0.630 GC content %: 44.157 | |
| Atauschii_AET4Gv20684400.3 AET4Gv20684400.3 |
High | No | 2713 | OG0000500 | Get ORF Coding potential... Type: noncoding Potential: -1.034 Folding energies... MFEI: -28.083 AMFE: -0.637 GC content %: 44.121 | |
| Atauschii_AET4Gv20684400.4 AET4Gv20684400.4 |
High | No | 2018 | OG0000500 | Get ORF Coding potential... Type: noncoding Potential: -1.062 Folding energies... MFEI: -28.984 AMFE: -0.628 GC content %: 46.135 | |
| Atauschii_AET4Gv20684400.5 AET4Gv20684400.5 |
High | No | 2724 | OG0000500 | Get ORF Coding potential... Type: noncoding Potential: -1.034 Folding energies... MFEI: -28.168 AMFE: -0.644 GC content %: 43.722 | |
| Atauschii_AET4Gv20684400.6 AET4Gv20684400.6 |
High | No | 3043 | OG0000500 | Get ORF Coding potential... Type: noncoding Potential: -1.044 Folding energies... MFEI: -28.570 AMFE: -0.654 GC content %: 43.707 | |
| Atauschii_AET4Gv20684400.7 AET4Gv20684400.7 |
High | No | 2119 | OG0000500 | Get ORF Coding potential... Type: noncoding Potential: -1.008 Folding energies... MFEI: -29.118 AMFE: -0.628 GC content %: 46.343 | |
| Atauschii_AET4Gv20684400.8 AET4Gv20684400.8 |
High | No | 1223 | OG0000500 | Get ORF Coding potential... Type: noncoding Potential: -0.994 Folding energies... MFEI: -33.565 AMFE: -0.618 GC content %: 54.293 | |
| Atauschii_AET4Gv20684400.9 AET4Gv20684400.9 |
High | No | 2035 | OG0000500 | Get ORF Coding potential... Type: noncoding Potential: -1.004 Folding energies... MFEI: -29.509 AMFE: -0.624 GC content %: 47.273 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
