Atauschii AET4Gv20711700
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET4Gv20711700 [ AET4Gv20711700] |
4D | 469851152 | 470070077 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET4Gv20711700.10 AET4Gv20711700.10 |
Low | Yes | 650 | OG0006963 | Get ORF Coding potential... Type: noncoding Potential: -0.617 Folding energies... MFEI: -33.046 AMFE: -0.723 GC content %: 45.692 | |
| Atauschii_AET4Gv20711700.11 AET4Gv20711700.11 |
High | No | 549 | OG0006963 | Get ORF Coding potential... Type: noncoding Potential: -0.377 Folding energies... MFEI: -39.326 AMFE: -0.677 GC content %: 58.106 | |
| Atauschii_AET4Gv20711700.12 AET4Gv20711700.12 |
High | No | 384 | OG0006963 | Get ORF Coding potential... Type: noncoding Potential: -0.669 Folding energies... MFEI: -40.365 AMFE: -0.668 GC content %: 60.417 | |
| Atauschii_AET4Gv20711700.13 AET4Gv20711700.13 |
High | No | 442 | OG0075394 | Get ORF Coding potential... Type: noncoding Potential: -0.743 Folding energies... MFEI: -37.964 AMFE: -0.533 GC content %: 71.267 | |
| Atauschii_AET4Gv20711700.14 AET4Gv20711700.14 |
Low | No | 835 | OG0016397 | Get ORF Coding potential... Type: noncoding Potential: -1.223 Folding energies... MFEI: -26.671 AMFE: -0.633 GC content %: 42.156 | |
| Atauschii_AET4Gv20711700.15 AET4Gv20711700.15 |
Low | No | 1200 | OG0016397 | Get ORF Coding potential... Type: noncoding Potential: -0.936 Folding energies... MFEI: -32.542 AMFE: -0.676 GC content %: 48.167 | |
| Atauschii_AET4Gv20711700.21 AET4Gv20711700.21 |
High | No | 464 | OG0016397 | Get ORF Coding potential... Type: noncoding Potential: -0.932 Folding energies... MFEI: -39.052 AMFE: -0.666 GC content %: 58.621 | |
| Atauschii_AET4Gv20711700.7 AET4Gv20711700.7 |
Low | Yes | 636 | OG0006963 | Get ORF Coding potential... Type: noncoding Potential: -0.937 Folding energies... MFEI: -30.676 AMFE: -0.712 GC content %: 43.082 | |
| Atauschii_AET4Gv20711700.8 AET4Gv20711700.8 |
Low | Yes | 608 | OG0006963 | Get ORF Coding potential... Type: noncoding Potential: -0.598 Folding energies... MFEI: -32.895 AMFE: -0.738 GC content %: 44.572 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET4Gv20711700.10 | SwissProt | 2021-04-01 | Q9KWQ6 | 1.12e-6 |
| Atauschii_AET4Gv20711700.10 | RepBase (RepeatMasker) | 2014-01-31 | DNA/TcMar-Stowaway | |
| Atauschii_AET4Gv20711700.7 | SwissProt | 2021-04-01 | Q9KWQ6 | 6.12e-6 |
| Atauschii_AET4Gv20711700.14 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
| Atauschii_AET4Gv20711700.8 | SwissProt | 2021-04-01 | Q9KWQ6 | 1.11e-6 |
| Atauschii_AET4Gv20711700.15 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
| Atauschii_AET4Gv20711700.10 | Rfam | 14.6 | mir-449 | 1.1e-6 |
| Atauschii_AET4Gv20711700.7 | RepBase (RepeatMasker) | 2014-01-31 | DNA/TcMar-Stowaway | |
| Atauschii_AET4Gv20711700.7 | Rfam | 14.6 | mir-449 | 1.1e-6 |
| Atauschii_AET4Gv20711700.8 | RepBase (RepeatMasker) | 2014-01-31 | DNA/TcMar-Stowaway |
... further results
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
