Atauschii AET4Gv20716400
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET4Gv20716400 [ AET4Gv20716400] |
4D | 472054756 | 472058141 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET4Gv20716400.1 AET4Gv20716400.1 |
Low | No | 1923 | OG0001000 | Get ORF Coding potential... Type: noncoding Potential: -0.812 Folding energies... MFEI: -29.360 AMFE: -0.634 GC content %: 46.334 | |
| Atauschii_AET4Gv20716400.14 AET4Gv20716400.14 |
Low | No | 3262 | OG0001000 | Get ORF Coding potential... Type: noncoding Potential: -0.933 Folding energies... MFEI: -30.077 AMFE: -0.674 GC content %: 44.605 | |
| Atauschii_AET4Gv20716400.15 AET4Gv20716400.15 |
High | No | 1213 | OG0001000 | Get ORF Coding potential... Type: noncoding Potential: -1.156 Folding energies... MFEI: -27.650 AMFE: -0.612 GC content %: 45.177 | |
| Atauschii_AET4Gv20716400.16 AET4Gv20716400.16 |
High | No | 1195 | OG0001000 | Get ORF Coding potential... Type: noncoding Potential: -1.155 Folding energies... MFEI: -27.615 AMFE: -0.616 GC content %: 44.854 | |
| Atauschii_AET4Gv20716400.17 AET4Gv20716400.17 |
Low | No | 982 | OG0001000 | Get ORF Coding potential... Type: noncoding Potential: -1.137 Folding energies... MFEI: -29.684 AMFE: -0.642 GC content %: 46.232 | |
| Atauschii_AET4Gv20716400.19 AET4Gv20716400.19 |
High | No | 1267 | OG0001000 | Get ORF Coding potential... Type: noncoding Potential: -1.159 Folding energies... MFEI: -27.364 AMFE: -0.614 GC content %: 44.594 | |
| Atauschii_AET4Gv20716400.2 AET4Gv20716400.2 |
Low | No | 1897 | OG0001000 | Get ORF Coding potential... Type: noncoding Potential: -0.811 Folding energies... MFEI: -29.410 AMFE: -0.633 GC content %: 46.494 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET4Gv20716400.14 | RepBase (RepeatMasker) | 2014-01-31 | DNA/MULE-MuDR | |
| Atauschii_AET4Gv20716400.17 | RepBase (RepeatMasker) | 2014-01-31 | DNA/MULE-MuDR | |
| Atauschii_AET4Gv20716400.2 | RepBase (RepeatMasker) | 2014-01-31 | DNA/MULE-MuDR | |
| Atauschii_AET4Gv20716400.1 | RepBase (RepeatMasker) | 2014-01-31 | DNA/MULE-MuDR |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
