Atauschii AET4Gv20723800
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET4Gv20723800 [ AET4Gv20723800] |
4D | 474681525 | 474685587 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET4Gv20723800.1 AET4Gv20723800.1 |
High | No | 2365 | OG0001001 | Get ORF Coding potential... Type: noncoding Potential: -1.013 Folding energies... MFEI: -32.262 AMFE: -0.676 GC content %: 47.696 | |
| Atauschii_AET4Gv20723800.10 AET4Gv20723800.10 |
High | No | 1622 | OG0001001 | Get ORF Coding potential... Type: noncoding Potential: -0.975 Folding energies... MFEI: -35.210 AMFE: -0.690 GC content %: 51.048 | |
| Atauschii_AET4Gv20723800.11 AET4Gv20723800.11 |
High | No | 1604 | OG0001001 | Get ORF Coding potential... Type: noncoding Potential: -0.973 Folding energies... MFEI: -34.358 AMFE: -0.670 GC content %: 51.247 | |
| Atauschii_AET4Gv20723800.12 AET4Gv20723800.12 |
High | No | 2114 | OG0001001 | Get ORF Coding potential... Type: noncoding Potential: -1.057 Folding energies... MFEI: -32.010 AMFE: -0.688 GC content %: 46.547 | |
| Atauschii_AET4Gv20723800.13 AET4Gv20723800.13 |
High | No | 1669 | OG0001001 | Get ORF Coding potential... Type: noncoding Potential: -0.968 Folding energies... MFEI: -31.863 AMFE: -0.682 GC content %: 46.735 | |
| Atauschii_AET4Gv20723800.14 AET4Gv20723800.14 |
High | No | 694 | OG0001001 | Get ORF Coding potential... Type: noncoding Potential: -0.909 Folding energies... MFEI: -34.553 AMFE: -0.657 GC content %: 52.594 | |
| Atauschii_AET4Gv20723800.2 AET4Gv20723800.2 |
High | No | 1302 | OG0001001 | Get ORF Coding potential... Type: noncoding Potential: -0.935 Folding energies... MFEI: -34.793 AMFE: -0.666 GC content %: 52.227 | |
| Atauschii_AET4Gv20723800.3 AET4Gv20723800.3 |
High | No | 959 | OG0001001 | Get ORF Coding potential... Type: noncoding Potential: -0.896 Folding energies... MFEI: -37.633 AMFE: -0.690 GC content %: 54.536 | |
| Atauschii_AET4Gv20723800.4 AET4Gv20723800.4 |
High | No | 1600 | OG0001001 | Get ORF Coding potential... Type: noncoding Potential: -0.962 Folding energies... MFEI: -35.194 AMFE: -0.674 GC content %: 52.250 | |
| Atauschii_AET4Gv20723800.5 AET4Gv20723800.5 |
High | No | 2689 | OG0001001 | Get ORF Coding potential... Type: noncoding Potential: -1.023 Folding energies... MFEI: -31.602 AMFE: -0.675 GC content %: 46.820 | |
| Atauschii_AET4Gv20723800.6 AET4Gv20723800.6 |
High | No | 2533 | OG0001001 | Get ORF Coding potential... Type: noncoding Potential: -1.018 Folding energies... MFEI: -32.373 AMFE: -0.683 GC content %: 47.375 | |
| Atauschii_AET4Gv20723800.7 AET4Gv20723800.7 |
High | No | 1582 | OG0001001 | Get ORF Coding potential... Type: noncoding Potential: -0.972 Folding energies... MFEI: -34.115 AMFE: -0.668 GC content %: 51.075 | |
| Atauschii_AET4Gv20723800.8 AET4Gv20723800.8 |
High | No | 1635 | OG0001001 | Get ORF Coding potential... Type: noncoding Potential: -0.976 Folding energies... MFEI: -35.076 AMFE: -0.677 GC content %: 51.804 | |
| Atauschii_AET4Gv20723800.9 AET4Gv20723800.9 |
High | No | 1510 | OG0001001 | Get ORF Coding potential... Type: noncoding Potential: -0.955 Folding energies... MFEI: -35.470 AMFE: -0.678 GC content %: 52.318 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
