GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET4Gv20731900 [ AET4Gv20731900]	4D	477839774	477849902	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET4Gv20731900.2 AET4Gv20731900.2	High	No	604	OG0016403		Get ORF Coding potential... Type: noncoding Potential: -0.579 Folding energies... MFEI: -34.205 AMFE: -0.534 GC content %: 64.073
Atauschii_AET4Gv20731900.4 AET4Gv20731900.4	High	No	783	OG0016403		Get ORF Coding potential... Type: noncoding Potential: -0.546 Folding energies... MFEI: -30.996 AMFE: -0.536 GC content %: 57.854
Atauschii_AET4Gv20731900.5 AET4Gv20731900.5	High	No	666	OG0075436		Get ORF Coding potential... Type: noncoding Potential: -0.423 Folding energies... MFEI: -33.889 AMFE: -0.521 GC content %: 65.015

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).