GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET4Gv20738100 [ AET4Gv20738100]	4D	480853890	480855190	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET4Gv20738100.1 AET4Gv20738100.1	High	No	327	OG0075442		Get ORF Coding potential... Type: noncoding Potential: -0.886 Folding energies... MFEI: -20.856 AMFE: -0.509 GC content %: 40.979
Atauschii_AET4Gv20738100.2 AET4Gv20738100.2	Low	No	344	OG0025425		Get ORF Coding potential... Type: noncoding Potential: -0.940 Folding energies... MFEI: -22.645 AMFE: -0.569 GC content %: 39.826
Atauschii_AET4Gv20738100.3 AET4Gv20738100.3	High	No	440	OG0025425		Get ORF Coding potential... Type: noncoding Potential: -0.565 Folding energies... MFEI: -23.432 AMFE: -0.573 GC content %: 40.909

Matches to external databases

The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias	Database	Version	Hit	Evalue
Atauschii_AET4Gv20738100.2	SwissProt	2021-04-01	Q6NQJ7	5.04e-4

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).