Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Atauschii_AET4Gv20777200 [ AET4Gv20777200] |
4D | 493080299 | 493084050 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Atauschii_AET4Gv20777200.1 AET4Gv20777200.1 |
High | No | 638 | OG0025436 | Get ORF Coding potential... Type: noncoding Potential: -0.926 Folding energies... MFEI: -30.000 AMFE: -0.628 GC content %: 47.806 | |
Atauschii_AET4Gv20777200.2 AET4Gv20777200.2 |
Low | No | 756 | OG0025436 | Get ORF Coding potential... Type: noncoding Potential: -1.073 Folding energies... MFEI: -29.828 AMFE: -0.628 GC content %: 47.487 | |
Atauschii_AET4Gv20777200.6 AET4Gv20777200.6 |
High | No | 380 | OG0075530 | Get ORF Coding potential... Type: noncoding Potential: -0.884 Folding energies... MFEI: -34.421 AMFE: -0.589 GC content %: 58.421 | |
Atauschii_AET4Gv20777200.7 AET4Gv20777200.7 |
High | No | 440 | OG0025437 | Get ORF Coding potential... Type: noncoding Potential: -0.980 Folding energies... MFEI: -32.545 AMFE: -0.553 GC content %: 58.864 | |
Atauschii_AET4Gv20777200.8 AET4Gv20777200.8 |
High | No | 403 | OG0025437 | Get ORF Coding potential... Type: noncoding Potential: -0.971 Folding energies... MFEI: -34.045 AMFE: -0.551 GC content %: 61.787 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Atauschii_AET4Gv20777200.2 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm |