GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET4Gv20781500 [ AET4Gv20781500]	4D	494441806	494743543	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET4Gv20781500.2 AET4Gv20781500.2	High	No	599	OG0016409		Get ORF Coding potential... Type: noncoding Potential: -0.656 Folding energies... MFEI: -26.494 AMFE: -0.606 GC content %: 43.740
Atauschii_AET4Gv20781500.3 AET4Gv20781500.3	High	No	403	OG0016409		Get ORF Coding potential... Type: noncoding Potential: -0.934 Folding energies... MFEI: -23.970 AMFE: -0.546 GC content %: 43.921
Atauschii_AET4Gv20781500.6 AET4Gv20781500.6	High	No	931	OG0016409		Get ORF Coding potential... Type: noncoding Potential: -0.912 Folding energies... MFEI: -22.771 AMFE: -0.597 GC content %: 38.131

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).