Atauschii AET4Gv20794200
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET4Gv20794200 [ AET4Gv20794200] |
4D | 499618318 | 499620346 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET4Gv20794200.1 AET4Gv20794200.1 |
High | No | 778 | OG0002385 | Get ORF Coding potential... Type: noncoding Potential: -1.167 Folding energies... MFEI: -23.907 AMFE: -0.655 GC content %: 36.504 | |
| Atauschii_AET4Gv20794200.10 AET4Gv20794200.10 |
High | No | 239 | OG0075564 | Get ORF Coding potential... Type: noncoding Potential: -1.075 Folding energies... MFEI: -23.933 AMFE: -0.590 GC content %: 40.586 | |
| Atauschii_AET4Gv20794200.2 AET4Gv20794200.2 |
High | No | 835 | OG0002385 | Get ORF Coding potential... Type: noncoding Potential: -1.178 Folding energies... MFEI: -24.263 AMFE: -0.641 GC content %: 37.844 | |
| Atauschii_AET4Gv20794200.3 AET4Gv20794200.3 |
High | No | 832 | OG0002385 | Get ORF Coding potential... Type: noncoding Potential: -1.178 Folding energies... MFEI: -24.087 AMFE: -0.638 GC content %: 37.740 | |
| Atauschii_AET4Gv20794200.4 AET4Gv20794200.4 |
High | No | 1731 | OG0002385 | Get ORF Coding potential... Type: noncoding Potential: -1.115 Folding energies... MFEI: -24.858 AMFE: -0.688 GC content %: 36.106 | |
| Atauschii_AET4Gv20794200.5 AET4Gv20794200.5 |
High | No | 606 | OG0002385 | Get ORF Coding potential... Type: noncoding Potential: -1.120 Folding energies... MFEI: -25.825 AMFE: -0.702 GC content %: 36.799 | |
| Atauschii_AET4Gv20794200.6 AET4Gv20794200.6 |
High | No | 777 | OG0002385 | Get ORF Coding potential... Type: noncoding Potential: -1.167 Folding energies... MFEI: -24.505 AMFE: -0.659 GC content %: 37.194 | |
| Atauschii_AET4Gv20794200.7 AET4Gv20794200.7 |
High | No | 774 | OG0002385 | Get ORF Coding potential... Type: noncoding Potential: -1.166 Folding energies... MFEI: -24.341 AMFE: -0.656 GC content %: 37.080 | |
| Atauschii_AET4Gv20794200.8 AET4Gv20794200.8 |
High | No | 594 | OG0002385 | Get ORF Coding potential... Type: noncoding Potential: -1.116 Folding energies... MFEI: -26.717 AMFE: -0.702 GC content %: 38.047 | |
| Atauschii_AET4Gv20794200.9 AET4Gv20794200.9 |
High | No | 1364 | OG0002385 | Get ORF Coding potential... Type: noncoding Potential: -1.093 Folding energies... MFEI: -25.022 AMFE: -0.688 GC content %: 36.364 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
