Atauschii AET4Gv20796500
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET4Gv20796500 [ AET4Gv20796500] |
4D | 500687080 | 500839447 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET4Gv20796500.12 AET4Gv20796500.12 |
Low | No | 343 | OG0075567 | Get ORF Coding potential... Type: noncoding Potential: -0.083 Folding energies... MFEI: -29.242 AMFE: -0.635 GC content %: 46.064 | |
| Atauschii_AET4Gv20796500.20 AET4Gv20796500.20 |
Low | No | 391 | OG0075568 | Get ORF Coding potential... Type: noncoding Potential: -0.167 Folding energies... MFEI: -24.808 AMFE: -0.567 GC content %: 43.734 | |
| Atauschii_AET4Gv20796500.25 AET4Gv20796500.25 |
Low | No | 618 | OG0010019 | Get ORF Coding potential... Type: noncoding Potential: -0.051 Folding energies... MFEI: -29.871 AMFE: -0.652 GC content %: 45.793 | |
| Atauschii_AET4Gv20796500.27 AET4Gv20796500.27 |
Low | No | 432 | OG0010019 | Get ORF Coding potential... Type: noncoding Potential: -1.111 Folding energies... MFEI: -30.093 AMFE: -0.634 GC content %: 47.454 | |
| Atauschii_AET4Gv20796500.5 AET4Gv20796500.5 |
Low | No | 369 | OG0075569 | Get ORF Coding potential... Type: noncoding Potential: -0.126 Folding energies... MFEI: -38.374 AMFE: -0.590 GC content %: 65.041 | |
| Atauschii_AET4Gv20796500.61 AET4Gv20796500.61 |
Low | No | 591 | OG0010019 | Get ORF Coding potential... Type: noncoding Potential: -0.237 Folding energies... MFEI: -30.711 AMFE: -0.626 GC content %: 49.069 | |
| Atauschii_AET4Gv20796500.62 AET4Gv20796500.62 |
Low | No | 726 | OG0010019 | Get ORF Coding potential... Type: noncoding Potential: -0.005 Folding energies... MFEI: -30.523 AMFE: -0.628 GC content %: 48.623 | |
| Atauschii_AET4Gv20796500.63 AET4Gv20796500.63 |
Low | No | 448 | OG0075570 | Get ORF Coding potential... Type: noncoding Potential: -0.246 Folding energies... MFEI: -28.192 AMFE: -0.599 GC content %: 47.098 | |
| Atauschii_AET4Gv20796500.70 AET4Gv20796500.70 |
Low | No | 379 | OG0075571 | Get ORF Coding potential... Type: noncoding Potential: -0.166 Folding energies... MFEI: -36.992 AMFE: -0.554 GC content %: 66.755 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET4Gv20796500.20 | SwissProt | 2021-04-01 | Q93YP9 | 5.03e-38 |
| Atauschii_AET4Gv20796500.63 | SwissProt | 2021-04-01 | Q9FRL3 | 2.35e-11 |
| Atauschii_AET4Gv20796500.25 | SwissProt | 2021-04-01 | Q9FRL3 | 5.08e-19 |
| Atauschii_AET4Gv20796500.70 | SwissProt | 2021-04-01 | Q93YP9 | 4.93e-13 |
| Atauschii_AET4Gv20796500.27 | SwissProt | 2021-04-01 | Q93YP9 | 5.88e-9 |
| Atauschii_AET4Gv20796500.25 | RepBase (RepeatMasker) | 2014-01-31 | LINE/L1 | |
| Atauschii_AET4Gv20796500.5 | SwissProt | 2021-04-01 | Q9FRL3 | 4.74e-14 |
| Atauschii_AET4Gv20796500.61 | SwissProt | 2021-04-01 | Q9FRL3 | 2.01e-25 |
| Atauschii_AET4Gv20796500.12 | SwissProt | 2021-04-01 | Q93YP9 | 1.41e-33 |
| Atauschii_AET4Gv20796500.62 | SwissProt | 2021-04-01 | Q9FRL3 | 7.05e-19 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
