GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET4Gv20808100 [ AET4Gv20808100]	4D	504945779	504948981	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET4Gv20808100.12 AET4Gv20808100.12	High	No	415	OG0025447		Get ORF Coding potential... Type: noncoding Potential: -0.783 Folding energies... MFEI: -25.181 AMFE: -0.565 GC content %: 44.578
Atauschii_AET4Gv20808100.17 AET4Gv20808100.17	High	No	722	OG0075590		Get ORF Coding potential... Type: noncoding Potential: -0.873 Folding energies... MFEI: -29.889 AMFE: -0.599 GC content %: 49.861
Atauschii_AET4Gv20808100.5 AET4Gv20808100.5	High	No	530	OG0075591		Get ORF Coding potential... Type: noncoding Potential: -1.137 Folding energies... MFEI: -33.491 AMFE: -0.516 GC content %: 64.906

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).