GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET4Gv20846500 [ AET4Gv20846500]	4D	515843887	515862718	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET4Gv20846500.43 AET4Gv20846500.43	Low	No	434	OG0075685		Get ORF Coding potential... Type: noncoding Potential: -0.990 Folding energies... MFEI: -23.226 AMFE: -0.548 GC content %: 42.396
Atauschii_AET4Gv20846500.49 AET4Gv20846500.49	High	No	240	OG0000695		Get ORF Coding potential... Type: noncoding Potential: -0.735 Folding energies... MFEI: -19.917 AMFE: -0.493 GC content %: 40.417
Atauschii_AET4Gv20846500.50 AET4Gv20846500.50	High	No	315	OG0075686		Get ORF Coding potential... Type: noncoding Potential: -0.706 Folding energies... MFEI: -28.444 AMFE: -0.627 GC content %: 45.397

Matches to external databases

The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias	Database	Version	Hit	Evalue
Atauschii_AET4Gv20846500.43	SwissProt	2021-04-01	A1A5H6	2.87e-10

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).