GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET4Gv20859300 [ AET4Gv20859300]	4D	519050640	519202361	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET4Gv20859300.1 AET4Gv20859300.1	High	No	335	OG0075713		Get ORF Coding potential... Type: noncoding Potential: -1.213 Folding energies... MFEI: -35.015 AMFE: -0.553 GC content %: 63.284
Atauschii_AET4Gv20859300.10 AET4Gv20859300.10	High	No	369	OG0025464		Get ORF Coding potential... Type: noncoding Potential: -1.313 Folding energies... MFEI: -23.902 AMFE: -0.569 GC content %: 42.005
Atauschii_AET4Gv20859300.11 AET4Gv20859300.11	High	No	304	OG0075714		Get ORF Coding potential... Type: noncoding Potential: -1.244 Folding energies... MFEI: -35.164 AMFE: -0.543 GC content %: 64.803
Atauschii_AET4Gv20859300.16 AET4Gv20859300.16	High	No	524	OG0075715		Get ORF Coding potential... Type: noncoding Potential: -0.652 Folding energies... MFEI: -28.664 AMFE: -0.601 GC content %: 47.710
Atauschii_AET4Gv20859300.9 AET4Gv20859300.9	High	No	739	OG0025464		Get ORF Coding potential... Type: noncoding Potential: -0.821 Folding energies... MFEI: -26.116 AMFE: -0.613 GC content %: 42.625

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).