Atauschii AET4Gv20878400
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET4Gv20878400 [ AET4Gv20878400] |
4D | 523027217 | 523031311 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET4Gv20878400.1 AET4Gv20878400.1 |
Low | No | 3564 | OG0000501 | Get ORF Coding potential... Type: noncoding Potential: -1.274 Folding energies... MFEI: -29.231 AMFE: -0.670 GC content %: 43.659 | |
| Atauschii_AET4Gv20878400.10 AET4Gv20878400.10 |
Low | No | 3453 | OG0000501 | Get ORF Coding potential... Type: noncoding Potential: -0.568 Folding energies... MFEI: -29.412 AMFE: -0.676 GC content %: 43.527 | |
| Atauschii_AET4Gv20878400.11 AET4Gv20878400.11 |
Low | No | 3304 | OG0000501 | Get ORF Coding potential... Type: noncoding Potential: -0.560 Folding energies... MFEI: -29.050 AMFE: -0.666 GC content %: 43.614 | |
| Atauschii_AET4Gv20878400.12 AET4Gv20878400.12 |
Low | No | 2573 | OG0000501 | Get ORF Coding potential... Type: noncoding Potential: -1.219 Folding energies... MFEI: -29.207 AMFE: -0.663 GC content %: 44.034 | |
| Atauschii_AET4Gv20878400.13 AET4Gv20878400.13 |
Low | No | 2771 | OG0000501 | Get ORF Coding potential... Type: noncoding Potential: -0.553 Folding energies... MFEI: -30.040 AMFE: -0.664 GC content %: 45.218 | |
| Atauschii_AET4Gv20878400.14 AET4Gv20878400.14 |
Low | No | 2939 | OG0000501 | Get ORF Coding potential... Type: noncoding Potential: -0.576 Folding energies... MFEI: -30.017 AMFE: -0.663 GC content %: 45.253 | |
| Atauschii_AET4Gv20878400.15 AET4Gv20878400.15 |
Low | No | 3289 | OG0000501 | Get ORF Coding potential... Type: noncoding Potential: -1.269 Folding energies... MFEI: -29.191 AMFE: -0.665 GC content %: 43.904 | |
| Atauschii_AET4Gv20878400.16 AET4Gv20878400.16 |
Low | No | 3307 | OG0000501 | Get ORF Coding potential... Type: noncoding Potential: -0.558 Folding energies... MFEI: -29.087 AMFE: -0.667 GC content %: 43.604 | |
| Atauschii_AET4Gv20878400.17 AET4Gv20878400.17 |
Low | No | 2711 | OG0000501 | Get ORF Coding potential... Type: noncoding Potential: -0.567 Folding energies... MFEI: -29.709 AMFE: -0.657 GC content %: 45.186 | |
| Atauschii_AET4Gv20878400.18 AET4Gv20878400.18 |
Low | No | 2474 | OG0000501 | Get ORF Coding potential... Type: noncoding Potential: -0.555 Folding energies... MFEI: -27.053 AMFE: -0.659 GC content %: 41.067 | |
| Atauschii_AET4Gv20878400.19 AET4Gv20878400.19 |
Low | No | 2741 | OG0000501 | Get ORF Coding potential... Type: noncoding Potential: -0.569 Folding energies... MFEI: -29.781 AMFE: -0.658 GC content %: 45.239 | |
| Atauschii_AET4Gv20878400.2 AET4Gv20878400.2 |
Low | No | 2638 | OG0000501 | Get ORF Coding potential... Type: noncoding Potential: -1.221 Folding energies... MFEI: -29.841 AMFE: -0.671 GC content %: 44.466 | |
| Atauschii_AET4Gv20878400.20 AET4Gv20878400.20 |
Low | No | 1422 | OG0000501 | Get ORF Coding potential... Type: noncoding Potential: -1.109 Folding energies... MFEI: -28.404 AMFE: -0.664 GC content %: 42.757 | |
| Atauschii_AET4Gv20878400.3 AET4Gv20878400.3 |
Low | No | 2862 | OG0000501 | Get ORF Coding potential... Type: noncoding Potential: -0.557 Folding energies... MFEI: -30.367 AMFE: -0.671 GC content %: 45.248 | |
| Atauschii_AET4Gv20878400.4 AET4Gv20878400.4 |
Low | No | 3240 | OG0000501 | Get ORF Coding potential... Type: noncoding Potential: -0.559 Folding energies... MFEI: -29.142 AMFE: -0.672 GC content %: 43.395 | |
| Atauschii_AET4Gv20878400.5 AET4Gv20878400.5 |
Low | No | 3427 | OG0000501 | Get ORF Coding potential... Type: noncoding Potential: -0.567 Folding energies... MFEI: -28.944 AMFE: -0.670 GC content %: 43.186 | |
| Atauschii_AET4Gv20878400.6 AET4Gv20878400.6 |
Low | No | 3425 | OG0000501 | Get ORF Coding potential... Type: noncoding Potential: -0.570 Folding energies... MFEI: -29.364 AMFE: -0.672 GC content %: 43.708 | |
| Atauschii_AET4Gv20878400.7 AET4Gv20878400.7 |
Low | No | 3364 | OG0000501 | Get ORF Coding potential... Type: noncoding Potential: -0.566 Folding energies... MFEI: -29.495 AMFE: -0.676 GC content %: 43.609 | |
| Atauschii_AET4Gv20878400.8 AET4Gv20878400.8 |
Low | No | 2850 | OG0000501 | Get ORF Coding potential... Type: noncoding Potential: -0.556 Folding energies... MFEI: -29.884 AMFE: -0.662 GC content %: 45.158 | |
| Atauschii_AET4Gv20878400.9 AET4Gv20878400.9 |
Low | No | 3432 | OG0000501 | Get ORF Coding potential... Type: noncoding Potential: -1.272 Folding energies... MFEI: -28.791 AMFE: -0.664 GC content %: 43.357 |
Matches to external databases
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET4Gv20878400.12 | RepBase (RepeatMasker) | 2014-01-31 | DNA/MULE-MuDR | |
| Atauschii_AET4Gv20878400.9 | RepBase (RepeatMasker) | 2014-01-31 | DNA/MULE-MuDR | |
| Atauschii_AET4Gv20878400.16 | SwissProt | 2021-04-01 | Q9ZVC9 | 2.47e-11 |
| Atauschii_AET4Gv20878400.8 | SwissProt | 2021-04-01 | Q9ZVC9 | 2.0e-11 |
| Atauschii_AET4Gv20878400.4 | RepBase (RepeatMasker) | 2014-01-31 | DNA/MULE-MuDR | |
| Atauschii_AET4Gv20878400.11 | SwissProt | 2021-04-01 | Q9ZVC9 | 2.47e-11 |
| Atauschii_AET4Gv20878400.18 | RepBase (RepeatMasker) | 2014-01-31 | DNA/MULE-MuDR | |
| Atauschii_AET4Gv20878400.3 | SwissProt | 2021-04-01 | Q9ZVC9 | 2.01e-11 |
| Atauschii_AET4Gv20878400.13 | RepBase (RepeatMasker) | 2014-01-31 | DNA/MULE-MuDR | |
| Atauschii_AET4Gv20878400.17 | SwissProt | 2021-04-01 | Q9SY66 | 8.54e-11 |
... further results
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
