GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET5Gv20029000 [ AET5Gv20029000]	5D	9403717	9408716	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET5Gv20029000.3 AET5Gv20029000.3	High	No	392	OG0075804		Get ORF Coding potential... Type: noncoding Potential: -0.330 Folding energies... MFEI: -40.459 AMFE: -0.583 GC content %: 69.388
Atauschii_AET5Gv20029000.5 AET5Gv20029000.5	Low	No	584	OG0025474		Get ORF Coding potential... Type: coding Potential: 0.334 Folding energies... MFEI: -27.637 AMFE: -0.607 GC content %: 45.548
Atauschii_AET5Gv20029000.6 AET5Gv20029000.6	High	No	408	OG0025474		Get ORF Coding potential... Type: noncoding Potential: -0.091 Folding energies... MFEI: -24.877 AMFE: -0.552 GC content %: 45.098

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).