Atauschii AET5Gv20029500
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET5Gv20029500 [ AET5Gv20029500] |
5D | 9502138 | 9506889 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET5Gv20029500.1 AET5Gv20029500.1 |
High | No | 2071 | OG0000191 | Get ORF Coding potential... Type: noncoding Potential: -1.157 Folding energies... MFEI: -33.578 AMFE: -0.675 GC content %: 49.734 | |
| Atauschii_AET5Gv20029500.10 AET5Gv20029500.10 |
High | No | 1797 | OG0000191 | Get ORF Coding potential... Type: noncoding Potential: -1.147 Folding energies... MFEI: -34.674 AMFE: -0.689 GC content %: 50.306 | |
| Atauschii_AET5Gv20029500.11 AET5Gv20029500.11 |
High | No | 1992 | OG0000191 | Get ORF Coding potential... Type: noncoding Potential: -1.154 Folding energies... MFEI: -35.417 AMFE: -0.692 GC content %: 51.205 | |
| Atauschii_AET5Gv20029500.12 AET5Gv20029500.12 |
High | No | 2282 | OG0000191 | Get ORF Coding potential... Type: noncoding Potential: -1.073 Folding energies... MFEI: -33.089 AMFE: -0.695 GC content %: 47.634 | |
| Atauschii_AET5Gv20029500.13 AET5Gv20029500.13 |
High | No | 1624 | OG0000191 | Get ORF Coding potential... Type: noncoding Potential: -1.138 Folding energies... MFEI: -35.714 AMFE: -0.690 GC content %: 51.786 | |
| Atauschii_AET5Gv20029500.14 AET5Gv20029500.14 |
High | No | 1468 | OG0000191 | Get ORF Coding potential... Type: noncoding Potential: -1.129 Folding energies... MFEI: -36.192 AMFE: -0.685 GC content %: 52.861 | |
| Atauschii_AET5Gv20029500.15 AET5Gv20029500.15 |
High | No | 2017 | OG0000191 | Get ORF Coding potential... Type: noncoding Potential: -1.155 Folding energies... MFEI: -35.191 AMFE: -0.691 GC content %: 50.917 | |
| Atauschii_AET5Gv20029500.16 AET5Gv20029500.16 |
High | No | 1794 | OG0000191 | Get ORF Coding potential... Type: noncoding Potential: -1.146 Folding energies... MFEI: -34.331 AMFE: -0.688 GC content %: 49.889 | |
| Atauschii_AET5Gv20029500.17 AET5Gv20029500.17 |
High | No | 1729 | OG0000191 | Get ORF Coding potential... Type: noncoding Potential: -1.144 Folding energies... MFEI: -34.928 AMFE: -0.693 GC content %: 50.376 | |
| Atauschii_AET5Gv20029500.18 AET5Gv20029500.18 |
High | No | 2245 | OG0000191 | Get ORF Coding potential... Type: noncoding Potential: -1.072 Folding energies... MFEI: -33.140 AMFE: -0.698 GC content %: 47.483 | |
| Atauschii_AET5Gv20029500.19 AET5Gv20029500.19 |
High | No | 2195 | OG0000191 | Get ORF Coding potential... Type: noncoding Potential: -1.070 Folding energies... MFEI: -33.239 AMFE: -0.698 GC content %: 47.608 | |
| Atauschii_AET5Gv20029500.2 AET5Gv20029500.2 |
High | No | 3420 | OG0000191 | Get ORF Coding potential... Type: noncoding Potential: -1.184 Folding energies... MFEI: -31.419 AMFE: -0.683 GC content %: 46.023 | |
| Atauschii_AET5Gv20029500.20 AET5Gv20029500.20 |
High | No | 3096 | OG0000191 | Get ORF Coding potential... Type: noncoding Potential: -1.180 Folding energies... MFEI: -31.965 AMFE: -0.687 GC content %: 46.544 | |
| Atauschii_AET5Gv20029500.21 AET5Gv20029500.21 |
High | No | 2892 | OG0000191 | Get ORF Coding potential... Type: noncoding Potential: -1.094 Folding energies... MFEI: -31.729 AMFE: -0.681 GC content %: 46.611 | |
| Atauschii_AET5Gv20029500.22 AET5Gv20029500.22 |
High | No | 1240 | OG0000191 | Get ORF Coding potential... Type: noncoding Potential: -1.112 Folding energies... MFEI: -35.871 AMFE: -0.685 GC content %: 52.339 | |
| Atauschii_AET5Gv20029500.23 AET5Gv20029500.23 |
High | No | 1797 | OG0000191 | Get ORF Coding potential... Type: noncoding Potential: -1.151 Folding energies... MFEI: -35.403 AMFE: -0.688 GC content %: 51.475 | |
| Atauschii_AET5Gv20029500.24 AET5Gv20029500.24 |
High | No | 2548 | OG0000191 | Get ORF Coding potential... Type: noncoding Potential: -1.083 Folding energies... MFEI: -30.624 AMFE: -0.677 GC content %: 45.251 | |
| Atauschii_AET5Gv20029500.25 AET5Gv20029500.25 |
High | No | 1493 | OG0000191 | Get ORF Coding potential... Type: noncoding Potential: -1.024 Folding energies... MFEI: -31.393 AMFE: -0.676 GC content %: 46.417 | |
| Atauschii_AET5Gv20029500.26 AET5Gv20029500.26 |
High | No | 2995 | OG0000191 | Get ORF Coding potential... Type: noncoding Potential: -1.252 Folding energies... MFEI: -29.387 AMFE: -0.679 GC content %: 43.272 | |
| Atauschii_AET5Gv20029500.27 AET5Gv20029500.27 |
High | No | 2833 | OG0000191 | Get ORF Coding potential... Type: noncoding Potential: -1.248 Folding energies... MFEI: -29.797 AMFE: -0.680 GC content %: 43.805 | |
| Atauschii_AET5Gv20029500.28 AET5Gv20029500.28 |
High | No | 3077 | OG0000191 | Get ORF Coding potential... Type: noncoding Potential: -1.098 Folding energies... MFEI: -29.832 AMFE: -0.687 GC content %: 43.451 | |
| Atauschii_AET5Gv20029500.29 AET5Gv20029500.29 |
High | No | 1826 | OG0000191 | Get ORF Coding potential... Type: noncoding Potential: -1.050 Folding energies... MFEI: -28.604 AMFE: -0.674 GC content %: 42.442 | |
| Atauschii_AET5Gv20029500.3 AET5Gv20029500.3 |
High | No | 3117 | OG0000191 | Get ORF Coding potential... Type: noncoding Potential: -1.099 Folding energies... MFEI: -32.358 AMFE: -0.693 GC content %: 46.679 | |
| Atauschii_AET5Gv20029500.30 AET5Gv20029500.30 |
High | No | 882 | OG0000191 | Get ORF Coding potential... Type: noncoding Potential: -1.121 Folding energies... MFEI: -27.812 AMFE: -0.623 GC content %: 44.671 | |
| Atauschii_AET5Gv20029500.4 AET5Gv20029500.4 |
High | No | 3299 | OG0000191 | Get ORF Coding potential... Type: noncoding Potential: -1.182 Folding energies... MFEI: -31.755 AMFE: -0.683 GC content %: 46.469 | |
| Atauschii_AET5Gv20029500.5 AET5Gv20029500.5 |
High | No | 1739 | OG0000191 | Get ORF Coding potential... Type: noncoding Potential: -1.144 Folding energies... MFEI: -35.003 AMFE: -0.690 GC content %: 50.719 | |
| Atauschii_AET5Gv20029500.6 AET5Gv20029500.6 |
High | No | 1698 | OG0000191 | Get ORF Coding potential... Type: noncoding Potential: -1.142 Folding energies... MFEI: -35.359 AMFE: -0.692 GC content %: 51.119 | |
| Atauschii_AET5Gv20029500.7 AET5Gv20029500.7 |
High | No | 3691 | OG0000191 | Get ORF Coding potential... Type: noncoding Potential: -1.110 Folding energies... MFEI: -31.281 AMFE: -0.690 GC content %: 45.354 | |
| Atauschii_AET5Gv20029500.8 AET5Gv20029500.8 |
High | No | 2232 | OG0000191 | Get ORF Coding potential... Type: noncoding Potential: -1.071 Folding energies... MFEI: -33.369 AMFE: -0.697 GC content %: 47.894 | |
| Atauschii_AET5Gv20029500.9 AET5Gv20029500.9 |
High | No | 1756 | OG0000191 | Get ORF Coding potential... Type: noncoding Potential: -1.145 Folding energies... MFEI: -34.983 AMFE: -0.690 GC content %: 50.683 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
