Atauschii AET5Gv20039500
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET5Gv20039500 [ AET5Gv20039500] |
5D | 13677854 | 13680838 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET5Gv20039500.10 AET5Gv20039500.10 |
Low | No | 1685 | OG0001908 | Get ORF Coding potential... Type: noncoding Potential: -0.322 Folding energies... MFEI: -30.249 AMFE: -0.619 GC content %: 48.902 | |
| Atauschii_AET5Gv20039500.11 AET5Gv20039500.11 |
Low | No | 700 | OG0001908 | Get ORF Coding potential... Type: noncoding Potential: -0.207 Folding energies... MFEI: -30.886 AMFE: -0.667 GC content %: 46.286 | |
| Atauschii_AET5Gv20039500.14 AET5Gv20039500.14 |
Low | No | 1419 | OG0001908 | Get ORF Coding potential... Type: noncoding Potential: -0.014 Folding energies... MFEI: -30.867 AMFE: -0.638 GC content %: 48.344 | |
| Atauschii_AET5Gv20039500.17 AET5Gv20039500.17 |
Low | No | 914 | OG0001908 | Get ORF Coding potential... Type: noncoding Potential: -0.204 Folding energies... MFEI: -28.009 AMFE: -0.540 GC content %: 51.860 | |
| Atauschii_AET5Gv20039500.2 AET5Gv20039500.2 |
Low | No | 1625 | OG0001908 | Get ORF Coding potential... Type: noncoding Potential: -0.047 Folding energies... MFEI: -29.982 AMFE: -0.634 GC content %: 47.323 | |
| Atauschii_AET5Gv20039500.3 AET5Gv20039500.3 |
Low | No | 1306 | OG0001908 | Get ORF Coding potential... Type: noncoding Potential: -0.286 Folding energies... MFEI: -32.136 AMFE: -0.610 GC content %: 52.680 | |
| Atauschii_AET5Gv20039500.4 AET5Gv20039500.4 |
Low | No | 1909 | OG0001908 | Get ORF Coding potential... Type: noncoding Potential: -0.341 Folding energies... MFEI: -29.319 AMFE: -0.608 GC content %: 48.193 | |
| Atauschii_AET5Gv20039500.6 AET5Gv20039500.6 |
Low | No | 1473 | OG0001908 | Get ORF Coding potential... Type: noncoding Potential: -0.306 Folding energies... MFEI: -30.910 AMFE: -0.594 GC content %: 52.003 | |
| Atauschii_AET5Gv20039500.8 AET5Gv20039500.8 |
Low | No | 1129 | OG0001908 | Get ORF Coding potential... Type: noncoding Potential: -0.267 Folding energies... MFEI: -28.361 AMFE: -0.664 GC content %: 42.693 | |
| Atauschii_AET5Gv20039500.9 AET5Gv20039500.9 |
Low | No | 1359 | OG0001908 | Get ORF Coding potential... Type: noncoding Potential: -0.010 Folding energies... MFEI: -31.325 AMFE: -0.592 GC content %: 52.907 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET5Gv20039500.8 | SwissProt | 2021-04-01 | Q10FF9 | 2.48e-15 |
| Atauschii_AET5Gv20039500.17 | SwissProt | 2021-04-01 | Q7FAS1 | 3.25e-16 |
| Atauschii_AET5Gv20039500.9 | SwissProt | 2021-04-01 | Q7FAS1 | 2.23e-15 |
| Atauschii_AET5Gv20039500.2 | SwissProt | 2021-04-01 | Q7FAS1 | 3.31e-15 |
| Atauschii_AET5Gv20039500.3 | SwissProt | 2021-04-01 | Q7FAS1 | 1.26e-15 |
| Atauschii_AET5Gv20039500.10 | SwissProt | 2021-04-01 | Q7FAS1 | 2.23e-15 |
| Atauschii_AET5Gv20039500.4 | SwissProt | 2021-04-01 | Q7FAS1 | 2.76e-15 |
| Atauschii_AET5Gv20039500.11 | SwissProt | 2021-04-01 | Q10FF9 | 1.31e-14 |
| Atauschii_AET5Gv20039500.6 | SwissProt | 2021-04-01 | Q7FAS1 | 1.7e-15 |
| Atauschii_AET5Gv20039500.14 | SwissProt | 2021-04-01 | Q7FAS1 | 2.5e-15 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
