GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET5Gv20079600 [ AET5Gv20079600]	5D	30658027	30667466	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET5Gv20079600.24 AET5Gv20079600.24	High	No	760	OG0016433		Get ORF Coding potential... Type: noncoding Potential: -0.558 Folding energies... MFEI: -29.974 AMFE: -0.655 GC content %: 45.789
Atauschii_AET5Gv20079600.27 AET5Gv20079600.27	High	No	719	OG0016433		Get ORF Coding potential... Type: noncoding Potential: -0.691 Folding energies... MFEI: -30.209 AMFE: -0.656 GC content %: 46.036
Atauschii_AET5Gv20079600.28 AET5Gv20079600.28	High	No	622	OG0016433		Get ORF Coding potential... Type: noncoding Potential: -0.563 Folding energies... MFEI: -30.579 AMFE: -0.628 GC content %: 48.714
Atauschii_AET5Gv20079600.32 AET5Gv20079600.32	High	No	263	OG0025488		Get ORF Coding potential... Type: noncoding Potential: -0.834 Folding energies... MFEI: -29.392 AMFE: -0.544 GC content %: 53.992
Atauschii_AET5Gv20079600.8 AET5Gv20079600.8	High	No	1135	OG0075862		Get ORF Coding potential... Type: noncoding Potential: -0.809 Folding energies... MFEI: -31.233 AMFE: -0.675 GC content %: 46.256

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).