Atauschii AET5Gv20095000
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET5Gv20095000 [ AET5Gv20095000] |
5D | 39316753 | 39319920 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET5Gv20095000.1 AET5Gv20095000.1 |
High | No | 1776 | OG0002388 | Get ORF Coding potential... Type: noncoding Potential: -0.949 Folding energies... MFEI: -38.609 AMFE: -0.710 GC content %: 54.392 | |
| Atauschii_AET5Gv20095000.10 AET5Gv20095000.10 |
Low | No | 2343 | OG0002388 | Get ORF Coding potential... Type: noncoding Potential: -0.847 Folding energies... MFEI: -34.187 AMFE: -0.685 GC content %: 49.893 | |
| Atauschii_AET5Gv20095000.11 AET5Gv20095000.11 |
High | No | 1582 | OG0002388 | Get ORF Coding potential... Type: noncoding Potential: -0.927 Folding energies... MFEI: -39.027 AMFE: -0.703 GC content %: 55.499 | |
| Atauschii_AET5Gv20095000.2 AET5Gv20095000.2 |
High | No | 1736 | OG0002388 | Get ORF Coding potential... Type: noncoding Potential: -0.841 Folding energies... MFEI: -38.704 AMFE: -0.711 GC content %: 54.435 | |
| Atauschii_AET5Gv20095000.3 AET5Gv20095000.3 |
High | No | 1720 | OG0002388 | Get ORF Coding potential... Type: noncoding Potential: -0.914 Folding energies... MFEI: -39.180 AMFE: -0.718 GC content %: 54.593 | |
| Atauschii_AET5Gv20095000.4 AET5Gv20095000.4 |
High | No | 1407 | OG0002388 | Get ORF Coding potential... Type: noncoding Potential: -0.919 Folding energies... MFEI: -38.849 AMFE: -0.684 GC content %: 56.787 | |
| Atauschii_AET5Gv20095000.5 AET5Gv20095000.5 |
Low | No | 2153 | OG0002388 | Get ORF Coding potential... Type: noncoding Potential: -0.972 Folding energies... MFEI: -34.770 AMFE: -0.690 GC content %: 50.395 | |
| Atauschii_AET5Gv20095000.6 AET5Gv20095000.6 |
High | No | 1370 | OG0002388 | Get ORF Coding potential... Type: noncoding Potential: -0.915 Folding energies... MFEI: -39.949 AMFE: -0.692 GC content %: 57.737 | |
| Atauschii_AET5Gv20095000.8 AET5Gv20095000.8 |
Low | No | 2171 | OG0002388 | Get ORF Coding potential... Type: noncoding Potential: -0.752 Folding energies... MFEI: -35.527 AMFE: -0.692 GC content %: 51.359 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET5Gv20095000.8 | RepBase (RepeatMasker) | 2014-01-31 | DNA/PIF-Harbinger | |
| Atauschii_AET5Gv20095000.10 | RepBase (RepeatMasker) | 2014-01-31 | DNA/PIF-Harbinger | |
| Atauschii_AET5Gv20095000.5 | RepBase (RepeatMasker) | 2014-01-31 | DNA/PIF-Harbinger |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
