Atauschii AET5Gv20095500
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET5Gv20095500 [ AET5Gv20095500] |
5D | 39339043 | 39357506 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET5Gv20095500.1 AET5Gv20095500.1 |
Low | No | 1285 | OG0000207 | Get ORF Coding potential... Type: noncoding Potential: -1.138 Folding energies... MFEI: -30.381 AMFE: -0.609 GC content %: 49.883 | |
| Atauschii_AET5Gv20095500.10 AET5Gv20095500.10 |
Low | No | 626 | OG0000207 | Get ORF Coding potential... Type: noncoding Potential: -1.088 Folding energies... MFEI: -25.160 AMFE: -0.573 GC content %: 43.930 | |
| Atauschii_AET5Gv20095500.2 AET5Gv20095500.2 |
Low | No | 1451 | OG0000207 | Get ORF Coding potential... Type: noncoding Potential: -1.152 Folding energies... MFEI: -29.972 AMFE: -0.628 GC content %: 47.691 | |
| Atauschii_AET5Gv20095500.3 AET5Gv20095500.3 |
Low | No | 1534 | OG0000207 | Get ORF Coding potential... Type: noncoding Potential: -1.169 Folding energies... MFEI: -24.048 AMFE: -0.613 GC content %: 39.244 | |
| Atauschii_AET5Gv20095500.4 AET5Gv20095500.4 |
Low | No | 1768 | OG0000207 | Get ORF Coding potential... Type: noncoding Potential: -1.117 Folding energies... MFEI: -27.902 AMFE: -0.624 GC content %: 44.683 | |
| Atauschii_AET5Gv20095500.5 AET5Gv20095500.5 |
Low | No | 1442 | OG0000207 | Get ORF Coding potential... Type: noncoding Potential: -1.165 Folding energies... MFEI: -28.724 AMFE: -0.614 GC content %: 46.810 | |
| Atauschii_AET5Gv20095500.6 AET5Gv20095500.6 |
Low | No | 612 | OG0000207 | Get ORF Coding potential... Type: noncoding Potential: -1.122 Folding energies... MFEI: -24.869 AMFE: -0.588 GC content %: 42.320 | |
| Atauschii_AET5Gv20095500.7 AET5Gv20095500.7 |
High | No | 1198 | OG0000207 | Get ORF Coding potential... Type: noncoding Potential: -0.786 Folding energies... MFEI: -29.800 AMFE: -0.621 GC content %: 47.997 | |
| Atauschii_AET5Gv20095500.8 AET5Gv20095500.8 |
Low | No | 1447 | OG0000207 | Get ORF Coding potential... Type: noncoding Potential: -1.165 Folding energies... MFEI: -28.853 AMFE: -0.637 GC content %: 45.266 | |
| Atauschii_AET5Gv20095500.9 AET5Gv20095500.9 |
Low | No | 1052 | OG0000207 | Get ORF Coding potential... Type: noncoding Potential: -0.976 Folding energies... MFEI: -31.065 AMFE: -0.614 GC content %: 50.570 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET5Gv20095500.5 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
| Atauschii_AET5Gv20095500.6 | SwissProt | 2021-04-01 | Q9S9P3 | 1.61e-4 |
| Atauschii_AET5Gv20095500.8 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
| Atauschii_AET5Gv20095500.8 | SwissProt | 2021-04-01 | Q9S9P3 | 4.88e-4 |
| Atauschii_AET5Gv20095500.1 | SwissProt | 2021-04-01 | Q9S9P3 | 4.02e-4 |
| Atauschii_AET5Gv20095500.9 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
| Atauschii_AET5Gv20095500.1 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
| Atauschii_AET5Gv20095500.10 | SwissProt | 2021-04-01 | Q9S9P3 | 8.39e-5 |
| Atauschii_AET5Gv20095500.2 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
| Atauschii_AET5Gv20095500.3 | SwissProt | 2021-04-01 | Q9S9P3 | 5.34e-4 |
... further results
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
