Atauschii AET5Gv20115000
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET5Gv20115000 [ AET5Gv20115000] |
5D | 47381177 | 47384184 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET5Gv20115000.1 AET5Gv20115000.1 |
Low | No | 2482 | OG0000443 | Get ORF Coding potential... Type: noncoding Potential: -0.233 Folding energies... MFEI: -27.949 AMFE: -0.589 GC content %: 47.421 | |
| Atauschii_AET5Gv20115000.10 AET5Gv20115000.10 |
High | No | 1131 | OG0000443 | Get ORF Coding potential... Type: noncoding Potential: -1.313 Folding energies... MFEI: -25.809 AMFE: -0.640 GC content %: 40.318 | |
| Atauschii_AET5Gv20115000.2 AET5Gv20115000.2 |
Low | No | 2606 | OG0000443 | Get ORF Coding potential... Type: noncoding Potential: -0.236 Folding energies... MFEI: -28.124 AMFE: -0.592 GC content %: 47.544 | |
| Atauschii_AET5Gv20115000.4 AET5Gv20115000.4 |
Low | No | 2728 | OG0000443 | Get ORF Coding potential... Type: noncoding Potential: -0.242 Folding energies... MFEI: -28.515 AMFE: -0.603 GC content %: 47.251 | |
| Atauschii_AET5Gv20115000.5 AET5Gv20115000.5 |
Low | No | 2916 | OG0000443 | Get ORF Coding potential... Type: noncoding Potential: -0.245 Folding energies... MFEI: -28.361 AMFE: -0.606 GC content %: 46.776 | |
| Atauschii_AET5Gv20115000.8 AET5Gv20115000.8 |
Low | No | 2444 | OG0000443 | Get ORF Coding potential... Type: noncoding Potential: -0.232 Folding energies... MFEI: -28.576 AMFE: -0.590 GC content %: 48.445 | |
| Atauschii_AET5Gv20115000.9 AET5Gv20115000.9 |
High | No | 1166 | OG0000443 | Get ORF Coding potential... Type: noncoding Potential: -1.344 Folding energies... MFEI: -25.480 AMFE: -0.640 GC content %: 39.794 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET5Gv20115000.4 | SwissProt | 2021-04-01 | Q53RB0 | 1.0e-11 |
| Atauschii_AET5Gv20115000.5 | SwissProt | 2021-04-01 | Q53RB0 | 1.07e-11 |
| Atauschii_AET5Gv20115000.8 | SwissProt | 2021-04-01 | Q53RB0 | 8.86e-12 |
| Atauschii_AET5Gv20115000.1 | SwissProt | 2021-04-01 | Q53RB0 | 9.02e-12 |
| Atauschii_AET5Gv20115000.2 | SwissProt | 2021-04-01 | Q53RB0 | 9.49e-12 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
