Atauschii AET5Gv20118100
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET5Gv20118100 [ AET5Gv20118100] |
5D | 48233754 | 48306536 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET5Gv20118100.1 AET5Gv20118100.1 |
High | No | 305 | OG0075926 | Get ORF Coding potential... Type: noncoding Potential: -1.249 Folding energies... MFEI: -19.377 AMFE: -0.501 GC content %: 38.689 | |
| Atauschii_AET5Gv20118100.2 AET5Gv20118100.2 |
High | No | 1690 | OG0010028 | Get ORF Coding potential... Type: noncoding Potential: -1.273 Folding energies... MFEI: -26.219 AMFE: -0.668 GC content %: 39.231 | |
| Atauschii_AET5Gv20118100.3 AET5Gv20118100.3 |
High | No | 1644 | OG0010028 | Get ORF Coding potential... Type: noncoding Potential: -1.271 Folding energies... MFEI: -26.521 AMFE: -0.667 GC content %: 39.781 | |
| Atauschii_AET5Gv20118100.4 AET5Gv20118100.4 |
High | No | 1560 | OG0010028 | Get ORF Coding potential... Type: noncoding Potential: -1.268 Folding energies... MFEI: -26.333 AMFE: -0.662 GC content %: 39.808 | |
| Atauschii_AET5Gv20118100.5 AET5Gv20118100.5 |
High | No | 2043 | OG0010028 | Get ORF Coding potential... Type: noncoding Potential: -1.193 Folding energies... MFEI: -24.606 AMFE: -0.674 GC content %: 36.515 | |
| Atauschii_AET5Gv20118100.6 AET5Gv20118100.6 |
High | No | 1269 | OG0025496 | Get ORF Coding potential... Type: noncoding Potential: -1.153 Folding energies... MFEI: -24.500 AMFE: -0.673 GC content %: 36.407 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
