GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET5Gv20153000 [ AET5Gv20153000]	5D	61831422	61843916	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET5Gv20153000.1 AET5Gv20153000.1	High	No	1071	OG0075995		Get ORF Coding potential... Type: noncoding Potential: -1.000 Folding energies... MFEI: -39.851 AMFE: -0.641 GC content %: 62.185
Atauschii_AET5Gv20153000.27 AET5Gv20153000.27	High	No	355	OG0025503		Get ORF Coding potential... Type: noncoding Potential: -1.218 Folding energies... MFEI: -22.930 AMFE: -0.631 GC content %: 36.338
Atauschii_AET5Gv20153000.28 AET5Gv20153000.28	High	No	276	OG0025503		Get ORF Coding potential... Type: noncoding Potential: -1.399 Folding energies... MFEI: -20.181 AMFE: -0.563 GC content %: 35.870

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).