Atauschii AET5Gv20158800
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET5Gv20158800 [ AET5Gv20158800] |
5D | 63716780 | 63720832 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET5Gv20158800.14 AET5Gv20158800.14 |
High | No | 3293 | OG0001003 | Get ORF Coding potential... Type: noncoding Potential: -1.055 Folding energies... MFEI: -28.217 AMFE: -0.642 GC content %: 43.942 | |
| Atauschii_AET5Gv20158800.15 AET5Gv20158800.15 |
High | No | 3986 | OG0001003 | Get ORF Coding potential... Type: noncoding Potential: -1.068 Folding energies... MFEI: -27.572 AMFE: -0.647 GC content %: 42.599 | |
| Atauschii_AET5Gv20158800.16 AET5Gv20158800.16 |
High | No | 2637 | OG0001003 | Get ORF Coding potential... Type: noncoding Potential: -1.016 Folding energies... MFEI: -29.435 AMFE: -0.639 GC content %: 46.037 | |
| Atauschii_AET5Gv20158800.17 AET5Gv20158800.17 |
High | No | 2552 | OG0001003 | Get ORF Coding potential... Type: noncoding Potential: -1.142 Folding energies... MFEI: -29.510 AMFE: -0.644 GC content %: 45.846 | |
| Atauschii_AET5Gv20158800.18 AET5Gv20158800.18 |
High | No | 2890 | OG0001003 | Get ORF Coding potential... Type: noncoding Potential: -1.266 Folding energies... MFEI: -28.512 AMFE: -0.649 GC content %: 43.945 | |
| Atauschii_AET5Gv20158800.2 AET5Gv20158800.2 |
High | No | 3012 | OG0001003 | Get ORF Coding potential... Type: noncoding Potential: -1.022 Folding energies... MFEI: -28.685 AMFE: -0.644 GC content %: 44.522 | |
| Atauschii_AET5Gv20158800.23 AET5Gv20158800.23 |
High | No | 2901 | OG0001003 | Get ORF Coding potential... Type: noncoding Potential: -1.013 Folding energies... MFEI: -28.590 AMFE: -0.641 GC content %: 44.571 | |
| Atauschii_AET5Gv20158800.26 AET5Gv20158800.26 |
High | No | 3573 | OG0001003 | Get ORF Coding potential... Type: noncoding Potential: -1.061 Folding energies... MFEI: -26.283 AMFE: -0.670 GC content %: 39.239 | |
| Atauschii_AET5Gv20158800.28 AET5Gv20158800.28 |
High | No | 2741 | OG0001003 | Get ORF Coding potential... Type: noncoding Potential: -1.166 Folding energies... MFEI: -26.808 AMFE: -0.682 GC content %: 39.292 | |
| Atauschii_AET5Gv20158800.29 AET5Gv20158800.29 |
High | No | 1958 | OG0001003 | Get ORF Coding potential... Type: noncoding Potential: -1.105 Folding energies... MFEI: -28.003 AMFE: -0.686 GC content %: 40.807 | |
| Atauschii_AET5Gv20158800.30 AET5Gv20158800.30 |
High | No | 2289 | OG0001003 | Get ORF Coding potential... Type: noncoding Potential: -1.278 Folding energies... MFEI: -26.972 AMFE: -0.687 GC content %: 39.275 | |
| Atauschii_AET5Gv20158800.5 AET5Gv20158800.5 |
High | No | 2559 | OG0001003 | Get ORF Coding potential... Type: noncoding Potential: -1.142 Folding energies... MFEI: -29.504 AMFE: -0.647 GC content %: 45.604 | |
| Atauschii_AET5Gv20158800.6 AET5Gv20158800.6 |
High | No | 2516 | OG0001003 | Get ORF Coding potential... Type: noncoding Potential: -0.949 Folding energies... MFEI: -28.680 AMFE: -0.626 GC content %: 45.827 | |
| Atauschii_AET5Gv20158800.8 AET5Gv20158800.8 |
High | No | 2939 | OG0001003 | Get ORF Coding potential... Type: noncoding Potential: -1.021 Folding energies... MFEI: -28.986 AMFE: -0.640 GC content %: 45.322 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
