Atauschii AET5Gv20176300
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET5Gv20176300 [ AET5Gv20176300] |
5D | 73476748 | 73479272 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET5Gv20176300.1 AET5Gv20176300.1 |
Low | No | 1827 | OG0001166 | Get ORF Coding potential... Type: noncoding Potential: -0.961 Folding energies... MFEI: -31.122 AMFE: -0.674 GC content %: 46.141 | |
| Atauschii_AET5Gv20176300.10 AET5Gv20176300.10 |
Low | No | 1784 | OG0001166 | Get ORF Coding potential... Type: noncoding Potential: -0.970 Folding energies... MFEI: -33.756 AMFE: -0.670 GC content %: 50.392 | |
| Atauschii_AET5Gv20176300.11 AET5Gv20176300.11 |
Low | No | 1700 | OG0001166 | Get ORF Coding potential... Type: noncoding Potential: -0.955 Folding energies... MFEI: -34.376 AMFE: -0.668 GC content %: 51.471 | |
| Atauschii_AET5Gv20176300.12 AET5Gv20176300.12 |
Low | No | 1820 | OG0001166 | Get ORF Coding potential... Type: noncoding Potential: -1.092 Folding energies... MFEI: -32.703 AMFE: -0.667 GC content %: 49.011 | |
| Atauschii_AET5Gv20176300.13 AET5Gv20176300.13 |
Low | No | 1131 | OG0001166 | Get ORF Coding potential... Type: noncoding Potential: -1.248 Folding energies... MFEI: -31.751 AMFE: -0.644 GC content %: 49.337 | |
| Atauschii_AET5Gv20176300.2 AET5Gv20176300.2 |
Low | No | 1939 | OG0001166 | Get ORF Coding potential... Type: noncoding Potential: -1.009 Folding energies... MFEI: -33.533 AMFE: -0.668 GC content %: 50.181 | |
| Atauschii_AET5Gv20176300.3 AET5Gv20176300.3 |
Low | No | 1861 | OG0001166 | Get ORF Coding potential... Type: noncoding Potential: -0.964 Folding energies... MFEI: -34.025 AMFE: -0.664 GC content %: 51.209 | |
| Atauschii_AET5Gv20176300.4 AET5Gv20176300.4 |
Low | No | 1953 | OG0001166 | Get ORF Coding potential... Type: noncoding Potential: -0.978 Folding energies... MFEI: -33.635 AMFE: -0.668 GC content %: 50.333 | |
| Atauschii_AET5Gv20176300.5 AET5Gv20176300.5 |
Low | No | 1863 | OG0001166 | Get ORF Coding potential... Type: noncoding Potential: -0.995 Folding energies... MFEI: -34.101 AMFE: -0.665 GC content %: 51.261 | |
| Atauschii_AET5Gv20176300.6 AET5Gv20176300.6 |
Low | No | 1732 | OG0001166 | Get ORF Coding potential... Type: noncoding Potential: -0.957 Folding energies... MFEI: -34.798 AMFE: -0.667 GC content %: 52.194 | |
| Atauschii_AET5Gv20176300.7 AET5Gv20176300.7 |
Low | No | 1749 | OG0001166 | Get ORF Coding potential... Type: noncoding Potential: -1.183 Folding energies... MFEI: -34.180 AMFE: -0.666 GC content %: 51.286 | |
| Atauschii_AET5Gv20176300.8 AET5Gv20176300.8 |
Low | No | 1391 | OG0001166 | Get ORF Coding potential... Type: noncoding Potential: -0.977 Folding energies... MFEI: -32.042 AMFE: -0.660 GC content %: 48.526 | |
| Atauschii_AET5Gv20176300.9 AET5Gv20176300.9 |
Low | No | 1696 | OG0001166 | Get ORF Coding potential... Type: noncoding Potential: -0.965 Folding energies... MFEI: -33.485 AMFE: -0.663 GC content %: 50.531 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET5Gv20176300.2 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
| Atauschii_AET5Gv20176300.1 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
| Atauschii_AET5Gv20176300.8 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
| Atauschii_AET5Gv20176300.3 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
| Atauschii_AET5Gv20176300.10 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
| Atauschii_AET5Gv20176300.9 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
| Atauschii_AET5Gv20176300.4 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
| Atauschii_AET5Gv20176300.11 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
| Atauschii_AET5Gv20176300.5 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
| Atauschii_AET5Gv20176300.12 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy |
... further results
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
