Atauschii AET5Gv20211400
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET5Gv20211400 [ AET5Gv20211400] |
5D | 95908846 | 95914528 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET5Gv20211400.10 AET5Gv20211400.10 |
Low | No | 4329 | OG0000208 | Get ORF Coding potential... Type: noncoding Potential: -0.349 Folding energies... MFEI: -28.599 AMFE: -0.637 GC content %: 44.930 | |
| Atauschii_AET5Gv20211400.11 AET5Gv20211400.11 |
Low | No | 3471 | OG0000208 | Get ORF Coding potential... Type: noncoding Potential: -1.162 Folding energies... MFEI: -29.091 AMFE: -0.635 GC content %: 45.808 | |
| Atauschii_AET5Gv20211400.12 AET5Gv20211400.12 |
Low | No | 4043 | OG0000208 | Get ORF Coding potential... Type: noncoding Potential: -0.409 Folding energies... MFEI: -28.804 AMFE: -0.636 GC content %: 45.263 | |
| Atauschii_AET5Gv20211400.13 AET5Gv20211400.13 |
Low | No | 4263 | OG0000208 | Get ORF Coding potential... Type: noncoding Potential: -0.932 Folding energies... MFEI: -28.342 AMFE: -0.633 GC content %: 44.781 | |
| Atauschii_AET5Gv20211400.14 AET5Gv20211400.14 |
Low | No | 4309 | OG0000208 | Get ORF Coding potential... Type: noncoding Potential: -0.959 Folding energies... MFEI: -28.618 AMFE: -0.634 GC content %: 45.161 | |
| Atauschii_AET5Gv20211400.17 AET5Gv20211400.17 |
Low | No | 3680 | OG0000208 | Get ORF Coding potential... Type: noncoding Potential: -0.922 Folding energies... MFEI: -29.186 AMFE: -0.635 GC content %: 45.978 | |
| Atauschii_AET5Gv20211400.2 AET5Gv20211400.2 |
Low | No | 3420 | OG0000208 | Get ORF Coding potential... Type: noncoding Potential: -0.388 Folding energies... MFEI: -29.399 AMFE: -0.633 GC content %: 46.462 | |
| Atauschii_AET5Gv20211400.21 AET5Gv20211400.21 |
Low | No | 3079 | OG0000208 | Get ORF Coding potential... Type: noncoding Potential: -1.014 Folding energies... MFEI: -27.078 AMFE: -0.646 GC content %: 41.929 | |
| Atauschii_AET5Gv20211400.5 AET5Gv20211400.5 |
Low | No | 4217 | OG0000208 | Get ORF Coding potential... Type: noncoding Potential: -1.042 Folding energies... MFEI: -28.424 AMFE: -0.635 GC content %: 44.747 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET5Gv20211400.12 | SwissProt | 2021-04-01 | Q6M9M7 | 6.74e-11 |
| Atauschii_AET5Gv20211400.17 | RepBase (RepeatMasker) | 2014-01-31 | LINE/R1; LTR/Ngaro | |
| Atauschii_AET5Gv20211400.5 | SwissProt | 2021-04-01 | Q10SY9 | 4.39e-5 |
| Atauschii_AET5Gv20211400.13 | SwissProt | 2021-04-01 | Q10SY9 | 4.45e-5 |
| Atauschii_AET5Gv20211400.2 | RepBase (RepeatMasker) | 2014-01-31 | LINE/R1; LTR/Ngaro | |
| Atauschii_AET5Gv20211400.10 | RepBase (RepeatMasker) | 2014-01-31 | LINE/R1; LTR/Ngaro | |
| Atauschii_AET5Gv20211400.14 | SwissProt | 2021-04-01 | Q6M9M7 | 2.57e-7 |
| Atauschii_AET5Gv20211400.21 | RepBase (RepeatMasker) | 2014-01-31 | LINE/R1; LTR/Ngaro | |
| Atauschii_AET5Gv20211400.12 | RepBase (RepeatMasker) | 2014-01-31 | LINE/R1; LTR/Ngaro | |
| Atauschii_AET5Gv20211400.17 | SwissProt | 2021-04-01 | Q10SY9 | 3.75e-5 |
... further results
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
