Atauschii AET5Gv20218800
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET5Gv20218800 [ AET5Gv20218800] |
5D | 101184039 | 101191222 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET5Gv20218800.1 AET5Gv20218800.1 |
High | No | 398 | OG0004766 | Get ORF Coding potential... Type: noncoding Potential: -1.164 Folding energies... MFEI: -18.442 AMFE: -0.450 GC content %: 40.955 | |
| Atauschii_AET5Gv20218800.10 AET5Gv20218800.10 |
High | No | 375 | OG0076116 | Get ORF Coding potential... Type: noncoding Potential: -0.058 Folding energies... MFEI: -50.747 AMFE: -0.689 GC content %: 73.600 | |
| Atauschii_AET5Gv20218800.2 AET5Gv20218800.2 |
High | No | 372 | OG0004766 | Get ORF Coding potential... Type: noncoding Potential: -1.150 Folding energies... MFEI: -19.220 AMFE: -0.458 GC content %: 41.935 | |
| Atauschii_AET5Gv20218800.3 AET5Gv20218800.3 |
High | No | 2772 | OG0004766 | Get ORF Coding potential... Type: noncoding Potential: -1.331 Folding energies... MFEI: -22.540 AMFE: -0.544 GC content %: 41.414 | |
| Atauschii_AET5Gv20218800.4 AET5Gv20218800.4 |
High | No | 944 | OG0004766 | Get ORF Coding potential... Type: noncoding Potential: -1.163 Folding energies... MFEI: -26.303 AMFE: -0.541 GC content %: 48.623 | |
| Atauschii_AET5Gv20218800.5 AET5Gv20218800.5 |
Low | No | 1223 | OG0076117 | Get ORF Coding potential... Type: noncoding Potential: -1.247 Folding energies... MFEI: -24.146 AMFE: -0.524 GC content %: 46.116 | |
| Atauschii_AET5Gv20218800.6 AET5Gv20218800.6 |
High | No | 1009 | OG0004766 | Get ORF Coding potential... Type: noncoding Potential: -1.176 Folding energies... MFEI: -28.484 AMFE: -0.540 GC content %: 52.725 | |
| Atauschii_AET5Gv20218800.7 AET5Gv20218800.7 |
High | No | 869 | OG0004766 | Get ORF Coding potential... Type: noncoding Potential: -1.145 Folding energies... MFEI: -25.788 AMFE: -0.529 GC content %: 48.792 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET5Gv20218800.5 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm; LINE/L1 | |
| Atauschii_AET5Gv20218800.5 | SwissProt | 2021-04-01 | P0C2F6 | 1.54e-4 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
