GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET5Gv20222600 [ AET5Gv20222600]	5D	105365148	105371418	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET5Gv20222600.1 AET5Gv20222600.1	High	No	502	OG0016448		Get ORF Coding potential... Type: noncoding Potential: -0.363 Folding energies... MFEI: -31.753 AMFE: -0.606 GC content %: 52.390
Atauschii_AET5Gv20222600.12 AET5Gv20222600.12	High	No	964	OG0016448		Get ORF Coding potential... Type: noncoding Potential: -0.426 Folding energies... MFEI: -26.940 AMFE: -0.620 GC content %: 43.465
Atauschii_AET5Gv20222600.6 AET5Gv20222600.6	High	No	560	OG0016448		Get ORF Coding potential... Type: noncoding Potential: -0.367 Folding energies... MFEI: -28.536 AMFE: -0.619 GC content %: 46.071

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).