Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Atauschii_AET5Gv20253600 [ AET5Gv20253600] |
5D | 126578015 | 126582926 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Atauschii_AET5Gv20253600.10 AET5Gv20253600.10 |
High | No | 1092 | OG0006978 | Get ORF Coding potential... Type: noncoding Potential: -1.231 Folding energies... MFEI: -26.493 AMFE: -0.630 GC content %: 42.033 | |
Atauschii_AET5Gv20253600.13 AET5Gv20253600.13 |
High | No | 800 | OG0006978 | Get ORF Coding potential... Type: noncoding Potential: -1.195 Folding energies... MFEI: -27.262 AMFE: -0.627 GC content %: 43.500 | |
Atauschii_AET5Gv20253600.17 AET5Gv20253600.17 |
Low | No | 1125 | OG0006978 | Get ORF Coding potential... Type: noncoding Potential: -1.106 Folding energies... MFEI: -24.204 AMFE: -0.638 GC content %: 37.956 | |
Atauschii_AET5Gv20253600.18 AET5Gv20253600.18 |
High | No | 2018 | OG0006978 | Get ORF Coding potential... Type: noncoding Potential: -1.166 Folding energies... MFEI: -30.545 AMFE: -0.695 GC content %: 43.954 | |
Atauschii_AET5Gv20253600.7 AET5Gv20253600.7 |
High | No | 902 | OG0006978 | Get ORF Coding potential... Type: noncoding Potential: -1.210 Folding energies... MFEI: -27.373 AMFE: -0.640 GC content %: 42.794 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Atauschii_AET5Gv20253600.17 | RepBase (RepeatMasker) | 2014-01-31 | DNA |