Atauschii AET5Gv20254600
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET5Gv20254600 [ AET5Gv20254600] |
5D | 127270818 | 127275114 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET5Gv20254600.1 AET5Gv20254600.1 |
Low | No | 2000 | OG0001168 | Get ORF Coding potential... Type: noncoding Potential: -0.341 Folding energies... MFEI: -32.145 AMFE: -0.624 GC content %: 51.550 | |
| Atauschii_AET5Gv20254600.10 AET5Gv20254600.10 |
Low | No | 1701 | OG0001168 | Get ORF Coding potential... Type: noncoding Potential: -0.304 Folding energies... MFEI: -33.768 AMFE: -0.663 GC content %: 50.970 | |
| Atauschii_AET5Gv20254600.11 AET5Gv20254600.11 |
Low | No | 1089 | OG0001168 | Get ORF Coding potential... Type: noncoding Potential: -0.171 Folding energies... MFEI: -29.320 AMFE: -0.662 GC content %: 44.261 | |
| Atauschii_AET5Gv20254600.12 AET5Gv20254600.12 |
Low | No | 964 | OG0001168 | Get ORF Coding potential... Type: noncoding Potential: -0.159 Folding energies... MFEI: -28.641 AMFE: -0.667 GC content %: 42.946 | |
| Atauschii_AET5Gv20254600.13 AET5Gv20254600.13 |
Low | No | 1725 | OG0001168 | Get ORF Coding potential... Type: noncoding Potential: -0.307 Folding energies... MFEI: -33.948 AMFE: -0.623 GC content %: 54.493 | |
| Atauschii_AET5Gv20254600.15 AET5Gv20254600.15 |
Low | No | 688 | OG0001168 | Get ORF Coding potential... Type: noncoding Potential: -0.088 Folding energies... MFEI: -30.291 AMFE: -0.670 GC content %: 45.203 | |
| Atauschii_AET5Gv20254600.21 AET5Gv20254600.21 |
Low | No | 1670 | OG0001168 | Get ORF Coding potential... Type: noncoding Potential: -0.378 Folding energies... MFEI: -32.024 AMFE: -0.621 GC content %: 51.557 | |
| Atauschii_AET5Gv20254600.23 AET5Gv20254600.23 |
Low | No | 1201 | OG0001168 | Get ORF Coding potential... Type: noncoding Potential: -0.329 Folding energies... MFEI: -33.214 AMFE: -0.635 GC content %: 52.290 | |
| Atauschii_AET5Gv20254600.24 AET5Gv20254600.24 |
Low | No | 1139 | OG0001168 | Get ORF Coding potential... Type: noncoding Potential: -0.314 Folding energies... MFEI: -34.644 AMFE: -0.596 GC content %: 58.121 | |
| Atauschii_AET5Gv20254600.25 AET5Gv20254600.25 |
Low | No | 1070 | OG0001168 | Get ORF Coding potential... Type: noncoding Potential: -0.124 Folding energies... MFEI: -35.140 AMFE: -0.593 GC content %: 59.252 | |
| Atauschii_AET5Gv20254600.26 AET5Gv20254600.26 |
Low | No | 1205 | OG0001168 | Get ORF Coding potential... Type: noncoding Potential: -1.128 Folding energies... MFEI: -34.647 AMFE: -0.602 GC content %: 57.593 | |
| Atauschii_AET5Gv20254600.27 AET5Gv20254600.27 |
High | No | 364 | OG0076192 | Get ORF Coding potential... Type: noncoding Potential: -1.120 Folding energies... MFEI: -27.610 AMFE: -0.414 GC content %: 66.758 | |
| Atauschii_AET5Gv20254600.28 AET5Gv20254600.28 |
High | No | 407 | OG0001168 | Get ORF Coding potential... Type: noncoding Potential: -0.845 Folding energies... MFEI: -30.590 AMFE: -0.479 GC content %: 63.882 | |
| Atauschii_AET5Gv20254600.5 AET5Gv20254600.5 |
Low | No | 615 | OG0001168 | Get ORF Coding potential... Type: noncoding Potential: -0.816 Folding energies... MFEI: -30.634 AMFE: -0.673 GC content %: 45.528 |
Matches to external databases
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET5Gv20254600.24 | SwissProt | 2021-04-01 | Q9FNB2 | 1.43e-6 |
| Atauschii_AET5Gv20254600.12 | SwissProt | 2021-04-01 | Q9FNB2 | 1.86e-11 |
| Atauschii_AET5Gv20254600.25 | SwissProt | 2021-04-01 | Q9C565 | 1.18e-17 |
| Atauschii_AET5Gv20254600.13 | SwissProt | 2021-04-01 | Q9FNB2 | 2.9e-6 |
| Atauschii_AET5Gv20254600.26 | SwissProt | 2021-04-01 | Q9C565 | 3.18e-8 |
| Atauschii_AET5Gv20254600.15 | SwissProt | 2021-04-01 | Q9FNB2 | 2.9e-12 |
| Atauschii_AET5Gv20254600.1 | SwissProt | 2021-04-01 | Q9FNB2 | 3.6e-6 |
| Atauschii_AET5Gv20254600.5 | SwissProt | 2021-04-01 | Q65XK0 | 4.13e-5 |
| Atauschii_AET5Gv20254600.21 | SwissProt | 2021-04-01 | Q9FNB2 | 2.77e-6 |
| Atauschii_AET5Gv20254600.10 | SwissProt | 2021-04-01 | Q9FNB2 | 2.84e-6 |
... further results
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
