Atauschii AET5Gv20256700
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET5Gv20256700 [ AET5Gv20256700] |
5D | 128893578 | 128899338 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET5Gv20256700.10 AET5Gv20256700.10 |
High | No | 3832 | OG0000876 | Get ORF Coding potential... Type: noncoding Potential: -1.003 Folding energies... MFEI: -29.896 AMFE: -0.677 GC content %: 44.128 | |
| Atauschii_AET5Gv20256700.11 AET5Gv20256700.11 |
High | No | 3250 | OG0000876 | Get ORF Coding potential... Type: noncoding Potential: -1.192 Folding energies... MFEI: -30.769 AMFE: -0.675 GC content %: 45.569 | |
| Atauschii_AET5Gv20256700.12 AET5Gv20256700.12 |
High | No | 3923 | OG0000876 | Get ORF Coding potential... Type: noncoding Potential: -1.005 Folding energies... MFEI: -29.839 AMFE: -0.674 GC content %: 44.303 | |
| Atauschii_AET5Gv20256700.13 AET5Gv20256700.13 |
High | No | 3013 | OG0000876 | Get ORF Coding potential... Type: noncoding Potential: -1.189 Folding energies... MFEI: -30.624 AMFE: -0.695 GC content %: 44.076 | |
| Atauschii_AET5Gv20256700.14 AET5Gv20256700.14 |
High | No | 3260 | OG0000876 | Get ORF Coding potential... Type: noncoding Potential: -1.192 Folding energies... MFEI: -29.353 AMFE: -0.701 GC content %: 41.871 | |
| Atauschii_AET5Gv20256700.16 AET5Gv20256700.16 |
High | No | 527 | OG0000876 | Get ORF Coding potential... Type: noncoding Potential: -1.140 Folding energies... MFEI: -23.340 AMFE: -0.634 GC content %: 36.812 | |
| Atauschii_AET5Gv20256700.17 AET5Gv20256700.17 |
High | No | 711 | OG0000876 | Get ORF Coding potential... Type: noncoding Potential: -0.946 Folding energies... MFEI: -27.412 AMFE: -0.639 GC content %: 42.897 | |
| Atauschii_AET5Gv20256700.18 AET5Gv20256700.18 |
High | No | 233 | OG0076200 | Get ORF Coding potential... Type: noncoding Potential: -0.946 Folding energies... MFEI: -13.305 AMFE: -0.369 GC content %: 36.052 | |
| Atauschii_AET5Gv20256700.19 AET5Gv20256700.19 |
High | No | 645 | OG0000876 | Get ORF Coding potential... Type: noncoding Potential: -0.934 Folding energies... MFEI: -27.612 AMFE: -0.627 GC content %: 44.031 | |
| Atauschii_AET5Gv20256700.2 AET5Gv20256700.2 |
High | No | 3390 | OG0000876 | Get ORF Coding potential... Type: noncoding Potential: -1.067 Folding energies... MFEI: -30.808 AMFE: -0.678 GC content %: 45.457 | |
| Atauschii_AET5Gv20256700.3 AET5Gv20256700.3 |
High | No | 4114 | OG0000876 | Get ORF Coding potential... Type: noncoding Potential: -1.077 Folding energies... MFEI: -29.823 AMFE: -0.680 GC content %: 43.850 | |
| Atauschii_AET5Gv20256700.4 AET5Gv20256700.4 |
High | No | 1238 | OG0076201 | Get ORF Coding potential... Type: noncoding Potential: -1.034 Folding energies... MFEI: -38.352 AMFE: -0.654 GC content %: 58.643 | |
| Atauschii_AET5Gv20256700.7 AET5Gv20256700.7 |
High | No | 3724 | OG0000876 | Get ORF Coding potential... Type: noncoding Potential: -1.088 Folding energies... MFEI: -30.209 AMFE: -0.679 GC content %: 44.468 | |
| Atauschii_AET5Gv20256700.8 AET5Gv20256700.8 |
High | No | 3852 | OG0000876 | Get ORF Coding potential... Type: noncoding Potential: -1.231 Folding energies... MFEI: -29.683 AMFE: -0.683 GC content %: 43.432 | |
| Atauschii_AET5Gv20256700.9 AET5Gv20256700.9 |
High | No | 3754 | OG0000876 | Get ORF Coding potential... Type: noncoding Potential: -1.229 Folding energies... MFEI: -29.750 AMFE: -0.683 GC content %: 43.580 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
