Atauschii AET5Gv20259400
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET5Gv20259400 [ AET5Gv20259400] |
5D | 130163042 | 130166529 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET5Gv20259400.1 AET5Gv20259400.1 |
High | No | 2069 | OG0000297 | Get ORF Coding potential... Type: noncoding Potential: -1.260 Folding energies... MFEI: -30.797 AMFE: -0.655 GC content %: 47.028 | |
| Atauschii_AET5Gv20259400.10 AET5Gv20259400.10 |
High | No | 2090 | OG0000297 | Get ORF Coding potential... Type: noncoding Potential: -1.261 Folding energies... MFEI: -31.402 AMFE: -0.640 GC content %: 49.091 | |
| Atauschii_AET5Gv20259400.11 AET5Gv20259400.11 |
High | No | 1941 | OG0000297 | Get ORF Coding potential... Type: noncoding Potential: -1.209 Folding energies... MFEI: -31.288 AMFE: -0.632 GC content %: 49.511 | |
| Atauschii_AET5Gv20259400.12 AET5Gv20259400.12 |
Low | No | 3092 | OG0000297 | Get ORF Coding potential... Type: noncoding Potential: -1.284 Folding energies... MFEI: -28.758 AMFE: -0.656 GC content %: 43.823 | |
| Atauschii_AET5Gv20259400.13 AET5Gv20259400.13 |
High | No | 1934 | OG0000297 | Get ORF Coding potential... Type: noncoding Potential: -1.255 Folding energies... MFEI: -32.125 AMFE: -0.660 GC content %: 48.707 | |
| Atauschii_AET5Gv20259400.14 AET5Gv20259400.14 |
Low | No | 2497 | OG0000297 | Get ORF Coding potential... Type: noncoding Potential: -1.272 Folding energies... MFEI: -29.107 AMFE: -0.663 GC content %: 43.893 | |
| Atauschii_AET5Gv20259400.16 AET5Gv20259400.16 |
High | No | 1921 | OG0000297 | Get ORF Coding potential... Type: noncoding Potential: -1.209 Folding energies... MFEI: -31.905 AMFE: -0.647 GC content %: 49.349 | |
| Atauschii_AET5Gv20259400.17 AET5Gv20259400.17 |
High | No | 2104 | OG0000297 | Get ORF Coding potential... Type: noncoding Potential: -1.261 Folding energies... MFEI: -31.773 AMFE: -0.659 GC content %: 48.194 | |
| Atauschii_AET5Gv20259400.2 AET5Gv20259400.2 |
High | No | 2090 | OG0000297 | Get ORF Coding potential... Type: noncoding Potential: -1.261 Folding energies... MFEI: -32.014 AMFE: -0.660 GC content %: 48.517 | |
| Atauschii_AET5Gv20259400.20 AET5Gv20259400.20 |
High | No | 1253 | OG0000297 | Get ORF Coding potential... Type: noncoding Potential: -1.169 Folding energies... MFEI: -28.324 AMFE: -0.636 GC content %: 44.533 | |
| Atauschii_AET5Gv20259400.21 AET5Gv20259400.21 |
High | No | 1198 | OG0000297 | Get ORF Coding potential... Type: noncoding Potential: -0.863 Folding energies... MFEI: -28.848 AMFE: -0.632 GC content %: 45.659 | |
| Atauschii_AET5Gv20259400.23 AET5Gv20259400.23 |
High | No | 1319 | OG0000297 | Get ORF Coding potential... Type: noncoding Potential: -1.267 Folding energies... MFEI: -32.502 AMFE: -0.645 GC content %: 50.417 | |
| Atauschii_AET5Gv20259400.24 AET5Gv20259400.24 |
High | No | 1160 | OG0000297 | Get ORF Coding potential... Type: noncoding Potential: -1.269 Folding energies... MFEI: -29.095 AMFE: -0.660 GC content %: 44.052 | |
| Atauschii_AET5Gv20259400.25 AET5Gv20259400.25 |
High | No | 793 | OG0000297 | Get ORF Coding potential... Type: noncoding Potential: -1.210 Folding energies... MFEI: -29.811 AMFE: -0.649 GC content %: 45.902 | |
| Atauschii_AET5Gv20259400.26 AET5Gv20259400.26 |
High | No | 833 | OG0000297 | Get ORF Coding potential... Type: noncoding Potential: -1.228 Folding energies... MFEI: -30.576 AMFE: -0.656 GC content %: 46.579 | |
| Atauschii_AET5Gv20259400.27 AET5Gv20259400.27 |
High | No | 1094 | OG0000297 | Get ORF Coding potential... Type: noncoding Potential: -1.072 Folding energies... MFEI: -29.369 AMFE: -0.614 GC content %: 47.806 | |
| Atauschii_AET5Gv20259400.28 AET5Gv20259400.28 |
High | No | 580 | OG0000297 | Get ORF Coding potential... Type: noncoding Potential: -1.222 Folding energies... MFEI: -37.121 AMFE: -0.647 GC content %: 57.414 | |
| Atauschii_AET5Gv20259400.29 AET5Gv20259400.29 |
High | No | 697 | OG0000297 | Get ORF Coding potential... Type: noncoding Potential: -1.200 Folding energies... MFEI: -35.524 AMFE: -0.657 GC content %: 54.089 | |
| Atauschii_AET5Gv20259400.3 AET5Gv20259400.3 |
High | No | 2107 | OG0000297 | Get ORF Coding potential... Type: noncoding Potential: -1.261 Folding energies... MFEI: -31.391 AMFE: -0.650 GC content %: 48.268 | |
| Atauschii_AET5Gv20259400.4 AET5Gv20259400.4 |
High | No | 2115 | OG0000297 | Get ORF Coding potential... Type: noncoding Potential: -1.216 Folding energies... MFEI: -31.248 AMFE: -0.648 GC content %: 48.227 | |
| Atauschii_AET5Gv20259400.5 AET5Gv20259400.5 |
High | No | 1319 | OG0000297 | Get ORF Coding potential... Type: noncoding Potential: -1.220 Folding energies... MFEI: -28.089 AMFE: -0.653 GC content %: 42.987 | |
| Atauschii_AET5Gv20259400.6 AET5Gv20259400.6 |
Low | No | 2236 | OG0000297 | Get ORF Coding potential... Type: noncoding Potential: -1.265 Folding energies... MFEI: -26.847 AMFE: -0.677 GC content %: 39.669 | |
| Atauschii_AET5Gv20259400.7 AET5Gv20259400.7 |
Low | No | 2713 | OG0000297 | Get ORF Coding potential... Type: noncoding Potential: -1.277 Folding energies... MFEI: -29.119 AMFE: -0.669 GC content %: 43.494 | |
| Atauschii_AET5Gv20259400.8 AET5Gv20259400.8 |
Low | No | 2909 | OG0000297 | Get ORF Coding potential... Type: noncoding Potential: -1.281 Folding energies... MFEI: -28.402 AMFE: -0.663 GC content %: 42.833 | |
| Atauschii_AET5Gv20259400.9 AET5Gv20259400.9 |
Low | No | 2839 | OG0000297 | Get ORF Coding potential... Type: noncoding Potential: -1.280 Folding energies... MFEI: -29.017 AMFE: -0.670 GC content %: 43.325 |
Matches to external databases
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET5Gv20259400.12 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
| Atauschii_AET5Gv20259400.14 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
| Atauschii_AET5Gv20259400.6 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
| Atauschii_AET5Gv20259400.7 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
| Atauschii_AET5Gv20259400.8 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
| Atauschii_AET5Gv20259400.9 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
